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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Advances in sequencing technologies and computational tools have uncovered a diversity of viruses that infect not … While most organism’s genetic information is encoded in DNA, with RNA delivering the instructions inside DNA to the … higher-level classifications of virus groups (phyla.) The new sequences are filling in some gaps on existing virus …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and … catalyzed by microbial communities. By pairing RNA or DNA sequencing with tracings of stable, heavy isotopes, SIP … Generating these datasets opens up the possibility of new insights across ecosystems and research teams. Even …
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An Earth Month Look at Sustainability Efforts at the JGI
… of Earth Month events throughout April. This year, a new group at the Lab, the Sustainable Garden Club, hosted a DIY Succulent Workshop and Plant Sale. All year, the JGI helps support finding solutions to clean energy and … — that works to prepare the IGB to be the first Lab building with laboratories where 90% of landfill waste is …
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iPHoP: A Matchmaker for Phages and their Hosts
… prediction approaches, researchers have created a new program called iPHoP (pronounced “eye-pop”,  freely … engineer microbial communities. One day, these phages could boost plant-microbe interactions, nutrient cycling, or … Facility at Lawrence Berkeley National Laboratory, aimed to streamline a process they often took on: generating …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Proposals aim to sequence and annotate genomes from Antarctica to Africa to … said Susannah Tringe, JGI User Programs Deputy. “These new CSP projects accelerate our efforts to characterize … physiology is impacted by these bacteria during mating processes. Kathryn Bushley of the University of Minnesota is …
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JGI@25: Strengthening Soybean
… is critical to energy independence in the U.S. Not only does it pair with maize, the dominant source of bioethanol, … first legume species with a published complete draft genome sequence. At the time, the vital global source of both … to the sequence’s availability via Phytozome. In 2015,  a new and revised version brought the soybean sequence up to …
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Strain Engineering
… yeasts and algae previously with little to no genetic tools enabling heterologous expression and functional … additional phase of user-accessible project types, in which DNA-based molecules can be chromosomally integrated into a …
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JGI on the 2020 Highly Cited Researchers List
… Congratulations to the 2020 Highly Cited Researchers at the JGI! They are among those recognized by Clarivate Analytics … that  released a very high quality reference genome sequence of green millet ( Setaria viridis ) in  Nature … from samples provided by more than 200 scientists and sequenced by the JGI through the  Community Science Program, …
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Novel Hydrophobins from Trichoderma Define a New Hydrophobin Subclass: Protein Properties, Evolution, Regulation and Processing
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ARBitrator: a software pipeline for on-demand retrieval of auto-curated nifH sequences from GenBank
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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI plays a leadership role in providing genome science … security. In complement to the Community Science Program, JGI researchers drive innovations that cross the boundaries … Metagenome, Metabolomics, Secondary Metabolites, and DNA Synthesis Science Programs and draw from the …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… and Roux also worked together on the development of a new software tool called geNomad that identifies and classifies … elements based upon their gene content and their genetic sequences. Roux was first author on a study featuring a new …
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