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Calculating the Costs of Multiple Switchgrass Gene Copies
… in North America that has been the target of extensive natural sampling and field experiments due to its potential … surveying the genomic and phenotypic diversity across the natural range of switchgrass found that polyploidy has … yield through a changing future. Switchgrass has multiple naturally occurring ploidy levels, called cytotypes, across …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Survey of Setaria's natural diversity reveals seed dispersal in wild populations … of plants have resulted in a paper published October 5, 2020 , in Nature Biotechnology . Kellogg and her colleagues, … “This paper is the first one to survey a huge amount of natural diversity and say, ‘Yeah, there are genes out there …
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How to Target a Microbial Needle within a Community Haystack
… cells that give off a much brighter signal. Cells from many natural environments are typically too dim to see by flow … enriching low abundance microbial groups from complex natural communities. This type of enrichment could be …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… it yourself  here .) She translated her abstract from a 2019 conference. Both versions appear side-by-side below: Kaze was part of the  2018 cohort of the JGI-UC Merced Genomics Internship … is part of  Mark Sistrom’s lab at the UC Merced School of Natural Sciences. The JGI-UC Merced Internship Program was …
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The fungus that made itself at home
… to thrive in manmade environments. As reported January 5, 2018 in The ISME Journal , a team led by University of Oslo … the Swedish Agricultural Sciences and FORMAS, and the UK Natural Environment Research Council. The work conducted by …
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Better Genome Editing for Bioenergy
… CRISPR-Cas9 relies on RNA with a short guiding sequence (20 bp) that directs the endonuclease where to cut, but these …
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Mindfully Moving JGI
… after countless generations of sequencing platforms (up to 120 sequencing machines at maximum) maintained by a workforce … from 4 single-story buildings to a new 4-story building 20 miles away in another city and county began more than … three years ago. For JGIers, the moving process began in 2017 with annual one-day cleanups. During those days, they …
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An Automated Tool for Assessing Virus Data Quality
… DE-AC02-05CH11231. This work was also supported the grant #2016/23218-0 from São Paulo Research Foundation (FAPESP). A.P.C. received a scholarship #2018/04240-0 from FAPESP. …
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JGI Announces 2023 Community Science Program Awardees
… to the proposers of the 19 proposals selected for the 2023 Community Science Program call of the U.S. Department … genomics, inter-organismal interactions, understanding natural communities important for carbon storage, nutrient … on our website. The approved proposals start October 1, 2022. See the full list of awardees below: …
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JGI & KBase at PAG XXVII
… Genome XXVII Conference (PAG) takes place January 12-16, 2019, in San Diego, Calif. Representatives from the DOE … on their work. BER Plant Genomic Science Workshop Agenda: 6:20 PM Overview and Joint Genome Institute Plant Program … Changes during Leaf Senescence in  Populus 8:03 PM Natural Diversity in  Setaria  and a Novel Gene for …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… scientist Simon Roux , who was recently selected as the 2025 recipient of the Microbiome Data Prize by the American … microbial sciences field. Roux will be recognized at the 2025 ASM Microbe Meeting in Los Angeles, Calif.  Roux is … viral diversity, understand the role of viruses in natural ecosystems, and functionally explore viral genetic …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship … UC Merced Senior Assistant Dean and CFO of the School of Natural Sciences Ernie Costello beamed as he spoke of what … working with Elizabeth Dumont , Dean of the School of Natural Sciences, to make sure that they provide the …
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