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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… regulate Earth’s climate. Most methane is produced in environments without oxygen through a process called … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Both studies were recently published in  Nature .  Researchers started by collecting samples from Yellowstone’s …
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At the Forefront of Terrestrial Virus Research
Rich and Matthew Sullivan. He shared a few thoughts on his summer at JGI through a program that provides graduate thesis research …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the Milky Way, … for one field of research can be harnessed elsewhere. In a  2019 paper , the team applied computational methods and …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… deep subsurface ecosystem. The Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … archaeal viruses and the corresponding CRISPR arrays of a highly abundant carbon fixer in Earth’s crust”. The work …
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Partnerships: Myco-Ed
The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based Undergraduate … DNA is extracted from samples, which is then sent to the JGI for genome sequencing, assembly and annotation. … The … user interface is designed for use by mycologists and researchers, facilitating the transition from genomic …
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JGI Workshop at 2025 Aquatic Sciences Meeting
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The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE)
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Draft Genome Sequence of the Moderately Halophilic Methanotroph Methylohalobius crimeensis Strain 10Ki
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Plant-Microbial Interactions Group
… associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and associated … and fungal expression patterns in root cross-sections. … 10.1038/s41579-020-0381-4 10.1038/s41396-020-0637-z … 10.1371/journal.pbio.2002860 … Postdocs: Margot Bezrutczyk (JGI Postdoc) Lamprinos Frantzeskakis (JGI Postdoc) Interns: …
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Cultivating Symbiotic Antarctic Microbes
Nanohaloarchaeota cultures reveal they are symbionts and not free-living organisms. The Science Researchers … and the biosphere), including the global carbon cycle. The JGI is sequencing large numbers of microbes and microbial … work was supported by the Australian Research Council (DP150100244) and the Australian Antarctic Science program …
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DOE JGI Metagenome Workflow
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An Integrated Dataset to Understand Ecosystem Interaction
… tree and soil dataset for understanding the dynamic relationship between poplar trees and their microbial partners. … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … contract DE-AC05-00OR22725. The work ( https://doi.org/10.46936/10.25585/60000017 ) conducted by the U.S. …
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