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When “The Blob” Made It Hotter Under the Water
… water samples when The Blob started. The samples were taken up and down the water column along the Line P transect, a … modeled the impact of The Blob on the microbial communities up and down the water column. They recently shared their … Genome Institute, an Office of Science User Facility, supported by the Office of Science of the U.S. Department of …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… the team focused on Actinobacteria ( Actinomycetota ), a group of bacteria with diverse metabolic activities. Found in … Many of these bacterial and archaeal genome sequences have been generated using techniques that the JGI has pioneered, … Actinobacteria Over the years more than 3,400 genomes have been sequenced from curated DSMZ isolates, for which quality …
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A Grass Model to Help Improve Giant Miscanthus
… toolkit for the perennial grass Miscanthus sinensis has been published. Analysis of the genome sequence also … Researchers at CABBI and elsewhere are following up on these discoveries to develop new varieties of … as a source of renewable bioenergy. … This work was supported by the Energy Biosciences Institute and the DOE …
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Building Sphagnum Genomic Resources
… researchers are developing a number of resources to build up Sphagnum as a plant model system focused on carbon … in nutrient-poor, acidic and waterlogged environments, occupying every continent except Antarctica. Researchers … terrestrial carbon is stored in peatlands, which make up nearly 3 percent of the earth’s land surface. In the New …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… the Danforth Plant Science Center (Danforth Center) drove up and down the highways of the continental United States, … population. Not very many of these shattering genes have been discovered that let a plant go all the way to seed but … The gene is an ortholog of known genes, “The gene has now been mapped back in maize as involved in leaf angle,” noted …
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Nikos Kyrpides
… with an emphasis on Microbiome Data Science. His group is developing novel methods for enabling large-scale … compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . 6(7):960-970. Nayfach S, et …
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Training the Next Generation of Talent
… student in the Quantitative Systems Biology (QSB) Group under the School of Natural Sciences (SNS). During his … have adjunct faculty positions with the SNS, and Wang’s group was hosting another QSB graduate student, Travis … of our entire graduate program! At this point the focus has been on students in the QSB graduate program, but I believe …
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JGI@25: The Little Alga That Could
Arthur Grossman of the Carnegie Institution, and Sabeeha Merchant of UCLA. Merchant is now at UC Berkeley and … to library research for three months. While reading up on photosynthesis, she stumbled upon an interesting … to annotate a genome. (Hear more from on Chlamy from Sabeeha Merchant in this episode of JGIotas, a Genome Insider …
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The Case for Conservation
… be associated with a plant’s sex. One outcome could be superfemale plants that have increased fruit and seed yield. … team to a similar sense of satisfaction. … This work was supported by NSF DEB-1541005 and start-up funds from UF to S.F.M.; microMORPH Cross-Disciplinary …
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JGI Earth Month: Wetlands Work in #TenHundredWords
User Programs deputy and head of the Microbial Systems group through the  DOE Office of Science Graduate Student … transport canals. Inspired by Randall Munroe’s xkcd comic “Up Goer Five” and his subsequent book  Thing Explainer, Kaze … National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy generation …
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User Programs
… and metabolomics capabilities Investigators who have not been a PI on any approved proposal with the JGI … calls and other opportunities to work with the JGI … User Support …
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JGI Scientists Pen Genome Watch Articles
… the monthly magazine each year.  Until then, the column had been written solely by scientists affiliated with the … genomics and metagenomics of the microbiology-focused groups at the Joint Genome Institute, it is fantastic that … putting the articles together and working with Andrea has been amazing,” says Woyke. “It’s a great opportunity for JGI …
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