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JGI@25: Using Team Science to Build Communities Around Data
… a 2012 Community Science Program proposal. Joseph Spatafora of Oregon State University led the effort to sequence … for an encyclopedia of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would … Fungi — from phylogenetic relationships to evolution of genomic mechanisms — resulting in the diversity of fungal …
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The genome of Syntrophorhabdus aromaticivorans strain UI provides new insights for syntrophic aromatic compound metabolism and electron flow
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Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium
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Tracing the Evolution of Shiitake Mushrooms
… besides Europe and Antarctica. A  new analysis takes a  genomic look at Lentinula samples from around the world. By … 60 existing sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks … genomes and their evolution could provide strategies for converting plant waste into sugars for  biofuel …
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Cultivating Symbiotic Antarctic Microbes
… to carbon cycling, and is interested in understanding the genomic basis and ecological consequences of microbe-microbe … of an obligate symbiont—entirely dependent on the other for required nutrients—is genome size. The obligate …
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Matt Blow
… as a research scientist on projects to develop functional genomic technologies and to understand genome function in … the lead of the User Support Analysis group. The group performs custom analysis and develops automated pipelines for … resequencing, transcriptome, epigenome and other functional genomics datasets generated by JGI user science projects. … …
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Supercharging SIP in the Fungal Hyphosphere
… successfully automated aspects of a commonly-used process for studying microbial communities, with results published … live in complex communities, like within soils or the gut, they are difficult to study individually. Many … with potential applications in industry and biotechnology for the production of  clean energy . Summary Arbuscular …
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Jie Guo
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The exceptional form and function of the giant bacterium Ca. Epulopiscium viviparus revolves around its sodium motive force
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Building on basic metagenomics with complementary technologies
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From Competition to Cooperation
… to carry out a broader analysis than had ever been done before to look at how multiple forest fungi have independently … will assist researchers in moving toward functional genomics studies to learn more about the inner workings of … DE-AC02-05CH11231 within the framework of the Mycorrhizal Genomics Initiative (CSP # 305), Metatranscriptomics of …
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Nutrient Inputs Stimulate Mercury Methylation by Syntrophs in a Subarctic Peatland
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