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… DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS projects. Through the Facilities …

… 2510 (2022). https://doi.org/10.1038/s41467-022-30118-9 Swift CL, et al. Anaerobic gut fungi are an untapped … products. Proceedings of the National Academy of Sciences. 2021 May 4;118(18). https://doi.org/10.1073/pnas.2019855118 … metabolism in an anoxic wetland soil. Nat Commun. 2021 Apr 29;12(1):1-6. …

… biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in symbiosis with plant … Cole led the work in collaboration with JBEI as part of the 2021 Laboratory Directed Research and Development (LDRD) … Cole and their team found over 1,000 upregulated genes, 188 of which were shared with previous studies in the same …

… Q:  To what extent is natural soil a limit to identify molecules exchanged between plants and microbiomes during … in the field. By having transcriptomics data across 2 years, as well as a second field trial (which will include a … see this  Metabolomics Data Analysis – Tips from Users page.  Q:  Is the metabolic study able to build a profile …

… assay with RNA sequencing, they were able to identify the target genes of 11 sigma factors in Streptomyces … and cellular differentiation. The tough part is identifying the set of genes associated with any particular … of sigma factors linked to at least one target gene to 18, with the number of factor-gene pairs almost doubling to …

… the publication date, whichever comes first. For nearly 40 years, the International Nucleotide Sequence Database … rights under JGI’s policy. In parallel, as of March 2nd, 2021, the JGI temporarily halted all automated submissions … issued a Request for Information (RFI), closing April 21st, 2021, to solicit additional community feedback on proposed …

… For the first time in several years, the DOE Joint Genome Institute hosted several UC Merced students this past summer. This year’s cohort for the JGI-UC Merced Internship Program was …

… Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research groups. The team … Having a better handle on the gene function helps identify the molecular targets for plant improvement. … to include six more species, so in total, we are looking at 18 different species, which included over 2000 RNA Seq …

… uncultured in laboratories. Other firsts followed. The next year, the JGI team reported the first closed and finished … deep-sea, oil-eating bacterium from a single cell. Several years later, the continuing single cell sequencing … JGI’s single cell genomics capabilities to assemble, identify, and characterize more than 200 microbial genomes that …

… in Nature 608, 38-39 (2022) and Preview article in Cell  185, 2013-2015 (2022). Gallaher S, Craig R, Ganesan I, … Niyogi KK, Schmutz J, Theg SM, Blaby-Haas CE, Merchant SS. (2021) Widespread polycistronic gene expression in green … PNAS  118 (7) e2017714118 Foflonker F and Blaby-Haas CE. (2021) Co-locality to co-functionality: Eukaryotic gene …

… applying a method that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo … precise genome editing. This means that scientists can modify gene expression, or delete genes, all with the rapid …