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A User-Centered Approach to Accessing JGI Data
… JGI Data Portal (https://data.jgi.doe.gov/) launched last year, it was only accessible through the plant portal  … Policy requires that users know about the FY Funding Year, and the publication status in addition to the …
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scMicrobe PTA: near complete genomes from single bacterial cells
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Model Fern Reveals Insight into DNA Thievery in Ferns
… a genome duplication event that occured some 60 million years ago. Massive gene loss, rampant gene duplications, and … (Berkeley Lab) took on the Open Green Genome Initiative in 2018 as part of its Community Science Program. The OGG has … US Department of Energy operated under Contract No. DE-AC02-05CH11231.This work was supported by US National Science …
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Extreme dimensions — how big (or small) can tailed phages be?
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Thousands of small, novel genes predicted in global phage genomes
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Mindfully Moving JGI
… sequencing labs in Building 100 were silent. Twenty years after the JGI united the genomics expertise of three … after countless generations of sequencing platforms (up to 120 sequencing machines at maximum) maintained by a workforce … miles away in another city and county began more than three years ago. For JGIers, the moving process began in 2017 with …
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Ian Blaby
… Since 2019 Dr. Blaby heads the Biodesign Platform at the Joint … in cyanobacteria Nature Communications 15(1) 3167. 2024 Simirenko et al ., gRNA-SeqRET: a universal tool for … Biology JGI Co-chair, People Stewardship committee (2020-2022) UCLA Molecular Biology Institute Postdoctoral …
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Tracking the Origins of Methane-Producing Microbes
… are estimated to produce 500 million tons of methane a year, which is over half the total global methane … of tons of the carbon dioxide trapped in biomass each year to do so. As such, they are considered to have a … three pathways for methanogenesis: hydrogen-dependent and CO2-reducing, or hydrogenotrophic (most common); …
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JGI on the 2020 Highly Cited Researchers List
… Congratulations to the 2020 Highly Cited Researchers at the JGI! They are among … papers that rank in the top 1% by citations for field and year in the Web of Science.” Less than 6,200 researchers … researchers were involved in, reported on over the last year: Kerrie Barry , Jane Grimwood , and  Jeremy Schmutz …
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SPRUCE-ing Up Science
… When Lawrence embarked on his PhD program at UC Merced in 2013, this field was just beginning to develop and expand … his PhD dissertation defense presentations and beyond. In 2018, a friend of his wife’s passed along an open postdoc … your point across as quickly as possible,” he said. After years of practice presenting his science and learning what …
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JGI announces second round of 2023 New Investigator awardees
… a widening circle of researchers. That’s why twice each year we look for novel research projects — aligned with DOE … find a list of the second round of researchers accepted for 2023. Proposals are accepted year-round; the next review will be conducted in November.  …
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A Complex Confection Decoded: Sugarcane Reference Genome
… partly enabled by the JGI’s Community Science Program; in 2018, a monoploid reference sequence of sugarcane … The work (proposal: https://doi.org/10.46936/10.25585/60001084 and https://doi.org/10.46936/10.25585/60001194) conducted by the USA Department of Energy …
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