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2022 Progress Report
… in the IGB. Vision The vision of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … facility enabling researchers to solve the world’s evolving energy and environmental challenges.   Mission  The mission …
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Mining Metagenomes for Cas Proteins
… (IMG/M) suite of tools managed by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … the world, conducting iterative searches using statistical analyses to continuously refine and improve the process. The … Cas9 genes . The work also used resources at the National Energy Research Scientific Computing Center , a DOE Office …
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Operating Expenses
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DAS Tool for Genome Reconstruction from Metagenomes
… technology and expertise in order to address pressing energy and environmental scientific challenges. In Nature … as tools such as this can help advance genome-centric analyses. DAS Tool will significantly enhance the ability to … exploring microbial communities engaged in mission relevant energy and environmental processes. …
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Gut Fungi: Unexpected Source of Novel Chemicals
… oxygen — just like we do. Oxygen is a rich source of energy, and because anaerobic fungi can’t harness it, scientists long held that these fungi don’t have the energy to make complex compounds called natural products . … Katherine Louie conducted mass spectrometry experiments (or analyses) to break up the compounds and to puzzle out their …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Initiative , a project supported by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … complex plants that could be applied toward DOE-relevant bioenergy and environmental interests.  Summary As the planet … Additionally, they want to expand their research into analyses of early-diverging land plants to further …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… lessons they can teach us, are why the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … and associated methylome, transcriptome and metabolome analyses for C-fern that was able to shed some light on the … The work conducted by the US Department of Energy Joint Genome Institute is supported by the Office of …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI … microbes ate the compound and how much they ate.  These analyses provide granular insight into microbial functions, … as a capability in proposal calls to the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… the world have collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … yet incomplete genome sequences which could bias the analyses. MAGs could also represent composites of … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User …
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Making a Lichen Together
… at bioengineering symbiotic microbial consortia for bioenergy crops. And because lichens are dominant carbon and … the Fungal & Algal Program lead at the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of …
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Sequencing Technologies & Products
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Ian Blaby
… et. al., Exploiting algal NADPH oxidase for biophotovoltaic energy. Plant biotechnology journal . 14: 1, 22-28. 2016 …
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