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JGI Scientists Pen Genome Watch Articles
Seshadri. Writing the  Nature   Reviews column all started with an email in 2018.  Tanja Woyke , who leads the  … Du Toit, senior editor for  Nature Reviews Microbiology, with an unusual opportunity: would JGI researchers consider … the column had been written solely by scientists affiliated with the Wellcome Sanger Institute in the UK — a nonprofit …
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JGI@25: Strengthening Soybean
… to energy independence in the U.S. Not only does it pair with maize, the dominant source of bioethanol, in crop … doesn’t yield enough gallons of fuel per acre to compete with gasoline. Yet.  In 2010, soybean became the first … 1.25 billion Gb (gigabasepairs — most fungi are around 50 million Mb, or megabases, in size). So, the JGI helped a …
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Ben Bowen
T., & Bowen, B. (2015). Analysis of metabolomics datasets with high-performance computing and metabolite atlases. … Diabetes, 59(1), 33–42. Bowen, B., & Northen, T. (2010). Dealing with the unknown: metabolomics and metabolite atlases. …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species decompose … Grigoriev, Fungal Genomics Program Head at the JGI.  Along with an improved understanding of multiple forest systems, … an investment portfolio. If a stress like wildfire or drought threatens some fungal species, other fungi will fill …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… of secondary metabolism. Hey everybody, this is Dan with episode 13 of National Prodcast. This continues our … at the time and had some really tedious technical problems with editing the recording. But I recently changed the audio … the day, all the content produced by microbes the result of millions of years of evolution. And if we could actually …
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Axel Visel
… of scientific policy, engaging in interactions with the scientific community at large. … 2021 LBNL … Wang Z, Visel A (2013). De novo transcriptome assembly of drought tolerant CAM plants, Agave deserti and Agave …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… and Ben Bowen of the  JGI Metabolomics Program , along with Jenny Mortimer, Director of Plant Systems Biology at … or biological samples (like cell media or lake water) without doing a metabolite extraction? Or are these samples … as well as a second field trial (which will include a drought treatment), we hope to understand this better. Q (re …
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Doubling Down on Known Protein Families
… wilder than ever. Imagine researchers exploring a dark room with a flashlight, only able to clearly identify what falls … protein families belonged to bacteria and viruses, though 6 million of the sequences evaded classification. Researchers … “So, that diversity is definitely holding a lot of new secrets in terms of functional diversity as well.”  …
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Party in the Rhizosphere
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Teredinibacter haidensis sp. nov., Teredinibacter purpureus sp. nov. and Teredinibacter franksiae sp. nov., marine, cellulolytic endosymbiotic bacteria isolated from the gills of the wood-boring mollusc Bankia setacea (Bivalvia: Teredinidae) and emended
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Fungus Fuels Tree Growth
… root cells. The fungus is almost always found among and within poplar trees, and in an effort to understand its … how poplar responds to its intimate associations with endophytes — a group whose effects on plants are still … poplar growth, the team compared poplar cuttings grown with and without an inoculation of the  M. elongata strain …
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Tanja Woyke
School of Natural Sciences since 2015. Prospective users with specific questions regarding their proposed research are encouraged to schedule time with Tanja Woyke .  Click to schedule … Tanja Woyke is the … … Volland et al. 2022. A centimeter-long bacterium with DNA contained in metabolically active, membrane-bound …
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