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… gene clusters (BGCs.) As reported in the recent Database issue of the journal Nucleic Acids Research , … over 1.3 million publicly available bacterial and archaeal genome and contig sources.  The Impact Secondary metabolites … using multiple commonly used sequence analysis tools is a means of expediting BGC and biosynthesis …

… plasmids. They can be found in virtually all of Earth’s ecosystems. A software tool  recently described in  Nature … created by researchers under the direction of Microbiome Data Science Group Lead Nikos Kyrpides at the U.S. … for identifying viruses and plasmids. Until now, most other tools have focused on identifying only specific plasmids or …

Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …

Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, … quality genome assemblies for all three grasses. With these datasets, researchers made a pan-genome containing four  B. … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …

Learn more about MycoCosm, a data portal with over 2,000 fungal genomes and multi-omics datasets, equipped with interactive web-based tools for comparative genomics and community annotation. …

… across southern Florida, they encompass a wide range of ecosystems ranging from wetlands to tree islands to cattails. In 2018, the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … the microbes that play roles in the methane cycle. Their data report, which provides the only known reference …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … DAN: Well, it is and it isn’t. It depends on different systems of secondary metabolism and the things that are in … probably been since the last decade. We have a lot more data. Obviously, there’s been a lot of sequencing going on, …

Harnessing BER-funded data resources, researchers built an interactive and … including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Berkeley National Laboratory (Berkeley Lab), and the DOE Systems Biology Knowledgebase (KBase). They also built an …