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A Plant Root Atlas for Tracking Developmental Trajectories
… and combining the information with previously published datasets. The work was  recently published in the journal  … “This represents the largest integration of single-cell datasets in plants and provides a foundation for still … Strategic Plan. The present paper provides a foundational data set that is now available through a new  single-cell …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… him about more recent work like ActDES, which is a curated database of actinobacteria for evolutionary studies, and … often end up realizing that what is defined by the KEGG [database], for example, is not enough even there. So it’s … all, we were approaching it on the basis of the available data that is out there. So let’s think about the metabolomic …
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Improving the Cacao Genome and Phytozome
… by a Mars, Inc.-led consortium through the Cacao Genome Database project. The genome sequence was assembled by the … to a high quality modern standard and includes RNA-seq data. The improved  T. cacao Matina 1-6 genome is now … Theobroma cacao on Phytozome Data Portal …
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Natural Prodcast Episode 16: Marcy Balunas
… massive problems just as much as it brings about massive data into really interesting ways to look at our systems. … figuring out how to filter out noise from the metabolomics data. We’ve done a lot of work learning about how to use … strain to look at.  And then figuring out how to show this data and to do it in a way that makes sense. And I always …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… users with various outputs free of charge, including data such as fully annotated genome assemblies or … that the resulting work will be published. JGI data is subject to a brief embargo period, after which it …
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CSP Functional Genomics
… for scientific merit, DOE mission relevance , proposed data usage by the applicant/community, and track record of …
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Natural Prodcast Episode 6: Marc Chevrette
… for a company. Personally, that was my first taste of big data if you want, maybe it’s medium data now. But at the time, it was big data. And yeah, trying to understand, first of all, how to …
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JGI Early Career Researchers Featured in mSystems Special Issue
… IMG/VR data portal …
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Natural Prodcast Episode 7: Ben Shen
… so everybody, readers of the library, can come to our databases and look for the specific information they are … the genomics, with the bioinformatics and with the bigger data, another area I see a great potential will be machine … fungal strains, that will generate a massive amount of data that current technology has never encountered in the …
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The fungus that made itself at home
… Serpula lacrymans on MycoCosm Data portal … Serpula humantioides on MycoCosm Data portal … Datasets … Datasets …
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Triggering Morel Fruiting
… Morel Mushrooms on MycoCosm Data Portal …
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Webinar: SIP technologies at EMSL and JGI
… with. 2. Q: What would a typical turnaround time be for data once samples are in hand at JGI? A: It takes a few …
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