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An Addiction Crucial to a Fungus’ Reproduction
… A fungus relies on bacteria to regulate key components of its reproductive machinery The Science To better … candidate bioenergy feedstocks sunflower, and maize, and a part of the oil-producing Mucoromycotina group, about which … sequenced and annotated a host genome (Rm ATCC 52813) as part of the 1000 Fungal Genomes project. As reported in the …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version … data that was formerly at Phytozome v12? All genome data released in Phytozome v12 (and version 13 and, in fact, all … version of Phytozome (e.g., 9, 10, 11, 12) they were first released in.  Are any genomes from v12 NOT available (via …
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Predominant Acidilobus-Like Populations from Geothermal Environments in Yellowstone National Park Exhibit Similar Metabolic Potential in Different Hypoxic Microbial Communities
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Viruses Reprogram Cells into Different Virocells
… from The Ohio State University and the University of Michigan studying how virus infections cause significant … the impacts of these infections on ecosystem functions. As part of efforts to characterize global microbial diversity … researcher in Sullivan’s lab. Their research was enabled in part by the  Facilities Integrating Collaborations for User …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… in their chosen field or fields through the publication of multiple highly cited papers during the last decade” by … and Tanja Woyke, were all instrumental in the development of the Novel Metagenome Protein Families (NMPF) Catalog . … looked to the evolutionary history of strawberries as part of a study to develop a method for identifying …
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Mindfully Moving JGI
… JGI is in the process of shifting its operations from Walnut Creek to the heart of … our environment,” said Christine Naca, JGI’s SWELL Lead and part of the IGB Move Team. “And also, so that the reusable … being diverted to be reused or recycled. And so that is in part recycling and sustainability. But it’s also so we’re …
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Streamlining Regulon Identification in Bacteria
… with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory … as identification of target genes of transcription factors, particularly sigma factors that initiate transcription in … science user facility, connecting genes to functions is part of the mission of the U.S. Department of Energy (DOE) …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More … performed on metagenomes as a custom analysis, i.e. is not part of the standard analysis pipeline but can be done on … IMG? A:  Depending on the project setup, we can include as part of our data analysis plan mapping of short-reads …
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Soil virus offers insight into maintaining microorganisms
… that may promote soil health. The work was enabled in part by a community data portal of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE … This work was supported by the Department of Energy (DOE) Office of Biological and Environmental …
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Webinar: PhycoCosm Tutorial
… JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative … are being added. We do plan to publish the tree or their parts and data it is based on 3.  Q(uestion): Can you please … on, there are 7 genomes on NCBI but your portal has only 2 of them. A: Watch the video (above) for the answer provided …
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Complete genome sequence of Geobacillus thermoglucosidasius C56-YS93, a novel biomass degrader isolated from obsidian hot spring in Yellowstone National Park
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… and researchers more about the patterns and functions of environmental microbes. Researchers can use the tool to … in all IMG metagenomes. The work is of interest to the Department of Energy (DOE) Office of Science’s Biological and … frequencies, and an area’s environment hosts particular organisms and metabolisms. This implies that …
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