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How Microbes Can Protect Plants in Drier Straits
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A sorghum genome-wide association study (GWAS) identifies a WRKY transcription factor as a candidate gene underlying sugarcane aphid (Melanaphis sacchari) resistance
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Shared Genomic Regions Between Derivatives of a Large Segregating Population of Maize Identified Using Bulked Segregant Analysis Sequencing and Traditional Linkage Analysis
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Fungal Friends or Foes in Plant Roots
… They play key roles in maintaining the plant’s health and diversity, which can in turn boost yields for both food and … work was partly enabled by a JGI Community Science Program (CSP) proposal led by INRAE’s Francis Martin that contributed … Contract No. DE-AC02-05CH11231 within the framework of CSP 1974 “1KFG: Deep-sequencing of ecologically relevant …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… and Environment (INRAE). Remarkable Similarity Despite Vast Diversity For this study, researchers collected soil samples … Overall, they found that despite vast species diversity, each guild carried out remarkably similar … said, the 1000 Fungal Genomes project, together with other CSP projects, had sequenced over 2,000 fungal genomes. The …
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JGI User Executive Committee Expands
… he’s interested in finding ways to boost visibility of the CSP to encourage more plant proposals and provide feedback … with interests in understanding which processes change biodiversity, and how these changes affect the dynamics and … challenges. She’s worked with the JGI on poplar and sorghum projects, specifically for generating libraries of …
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Uncovering Novel Genomes from Earth’s Microbiomes
… genomes for just a small fraction of Earth’s microbial diversity. Because most microbes cannot be cultivated under … designed for biologists and bioinformaticians, developed metabolic models for thousands of MAGs. The models are now … , which provides shareable, reproducible workflows. “Metabolic modeling is a routine analysis for isolate …
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Katherine Louie
… impact the composition of the root-associated microbiome in maize (Zea mays). Scientific Reports. 2021. … in rhizosphere microbial community assembly. Nat Microbiol. 2018;3: 470–480. 7. Louie KB, Bowen BP, McAlhany S, Huang Y, …
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Analyses of expressed sequence tags from the maize foliar pathogen Cercospora zeae-maydis identify novel genes expressed during vegetative, infectious, and reproductive growth
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JGI Announces 2025 New Investigator Portfolio
… the effects of biochar on rhizosphere microbiomes, and the metabolic pathways of algae. They will harness JGI …
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JGI on the 2021 Highly Cited Researchers List
… natural ecosystems, and functionally explore viral genetic diversity toward innovative biotechnological and industrial … a JGI Engagement Webinar on How to Successfully Apply for a CSP Proposal. She also co-organized the NeLLi 2021 … move from identification of microbial novelty to assigning metabolic and functional capabilities. Videos from symposium …
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Functional Genomics of Novel Secondary Metabolites from Diverse Cyanobacteria Using Untargeted Metabolomics
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