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Optofluidic Raman-activated cell sorting for targeted genome retrieval or cultivation of microbial cells with specific functions
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Ancient polymorphisms contribute to genome-wide variation by long-term balancing selection and divergent sorting in Boechera stricta
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    Understanding how … lights turn on or machines start humming, gene regulation determines when and where genes are activated to sustain … times. But, there’s a lot of action happening in terms of where those binding sites are in the genome — those …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… JGI-led team significantly expands the global diversity of large and giant viruses. While the microbes in a single … replicate faster and produce more progeny. This can provide short- and long-term impact on host metabolism in general, or on host … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Supercharging SIP in the Fungal Hyphosphere
… The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial communities, with results published in the  November 2022 issue of Microbiome … probing (SIP) proved to vastly reduce labor and improve results. Applying this method to the study of a particular …
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Triggering Morel Fruiting
… A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis … In the following guest piece, JGI user Dr. Tan details the results of the team’s work. Morels are economically, … these analyses, we conducted further field experiments to determine the biochemical processes taking place during the …
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of reference genomes and thousands of resequenced sorghum … has long been one of the JGI’s  Flagship Plants , on the short list of plant genomes deemed most important to DOE … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… In this short video, UC Merced undergraduate and graduate students … And also specifically, it sparked my interest in bioformatics, so that’s what I’m gonna take with me to the … are a little bit stronger in computing, so I was kind of worried coming into the, the internship that maybe I …
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Extensive Genome-Wide Phylogenetic Discordance Is Due to Incomplete Lineage Sorting and Not Ongoing Introgression in a Rapidly Radiated Bryophyte Genus
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Mapping Heat Resistance in Yeasts
… annotation in fungal genomes. The Science In a proof-of-concept study, researchers demonstrated that a new … are more than 1,000 species of yeasts and they vary in terms of genetics, metabolism and biochemistry. Their … as part of a 2014 Community Science Program project. The results revealed that at each of eight genes, having a …
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Effects of Polar Light Cycle on Microbial Food Web
… Populations of Antarctic lake microbial communities change with the … with light availability. A long-running time-series study offers a first glimpse into a full season’s cycle of this … from all three sections of the stratified water and determined that the microbial communities look very different …
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Natural Prodcast Episode 4: Nancy Keller
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Welcome back to Natural … They’re too hard to work with.” And that made me more determined than ever to stick with fungi. And now I think we …
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