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Plotting a Model for Virus-Host Warfare Deep Below Ground
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … 150 archaeal viruses had been previously identified. The JGI researchers surveyed publicly available data in the JGI’s  IMG/M database , information the Probst lab used to …
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Taking Stock of the Known and Unknown Microbial Space
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of their diversity we've actually captured,” said co-first author Dongying Wu, a member of the Functional Annotation … only scratched the surface.” The study, added co-first author Rekha Seshadri, is a wake-up call to revive the art …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… A group led by JGI scientists have made strides in improving and applying a … to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  Nature … our ability to offer host-engineering for our users,” says JGI Director Nigel Mouncey. Using CRAGE, JGI has established …
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Green Algae Reveal One mRNA Encodes Many Proteins
… a research scientist in Sabeeha Merchant’s lab and first author of the article. The research team included scientists … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … (FICUS) collaborative science initiative between the JGI and EMSL.  …
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CSP Functional Genomics
… function.  The emphasis is on projects leveraging JGI’s DNA synthesis and ‘omics capabilities to enhance … without the capabilities and expertise available at the JGI. Proposals to this call may be submitted to the JGI at any time using a simple web-based form and are …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… New 5-year strategic plan outlines how the JGI will advance the bioeconomy, leveraging partnerships to … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has released its newest 5-Year Strategic Plan: … requires a deep understanding of biological systems. The JGI strategic plan lays out how users and the global …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… JGI-led team significantly expands the global diversity of … metabolic features and putative hosts,” noted study senior author  Tanja Woyke , who heads JGI’s  Microbial Program . … the megabase range. The study’s lead and co-corresponding author Frederik Schulz, a research scientist in Woyke’s …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at UC … seminal Cas9 proteins cleave double-stranded DNA. Co-first author Lucas Harrington was a graduate student from study senior author Jennifer Doudna’s lab, and he worked with co-first …
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User Support
… The JGI Project Management Office carries out a number of activities to facilitate world-class science. DOE JGI Project Managers collaborate with users to develop … a formal Statement of Work (SOW). All work performed at the JGI is initiated via the Work Initiation Process (WIP) …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … for thousands of branches,” said Natalia Ivanova, senior author of the study and head of the JGI’s Microbiome … isolate genomes is clear cut,” said Rekha Seshadri, lead author of the study. “And even if one is agnostic to …
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iPHoP: A Matchmaker for Phages and their Hosts
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … a dispersal gene that way,” said Kellogg, a senior author of the paper. “This paper is the first one to survey … Shattering 1 (SvLes1); gene editing studies led by co-first author Pu Huang confirmed that it was involved in shattering …
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