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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… the surrounding neighborhood,” said Benjamin Cole, senior author of this work. Cole is a research scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … in those environments,”  Karen Serrano said. She is first author of this paper and a graduate researcher at the Joint …
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Nigel Mouncey
… and today, focuses on continuing to build and position JGI as a leading integrative genome science user facility.  In addition to serving as JGI Director, Dr. Mouncey leads his own science group at JGI focused on secondary metabolites. He is also on the … is the Secondary Metabolites Program head as well as our JGI Director. Click to learn more about the program's areas …
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Biodesign
… assembly and analysis Overview of biodesign products The JGI Biodesign platform enables users to validate hypotheses … develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program.    Representative software … and associated tools, which track samples through the JGI’s Synthetic Biology pipeline as well as provide process …
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Massie S. Ballon
… S. Ballon is the Communications and Outreach Manager at the JGI. Through multi-platform stories and outreach efforts, … the team aims to broaden awareness of and access to JGI public resources and the DOE mission, as well as help … narratives for diverse audiences. In her prior role as a JGI communications specialist, she served as the primary …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … 150 archaeal viruses had been previously identified. The JGI researchers surveyed publicly available data in the JGI’s  IMG/M database , information the Probst lab used to …
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Taking Stock of the Known and Unknown Microbial Space
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of their diversity we've actually captured,” said co-first author Dongying Wu, a member of the Functional Annotation … only scratched the surface.” The study, added co-first author Rekha Seshadri, is a wake-up call to revive the art …
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Green Algae Reveal One mRNA Encodes Many Proteins
… a research scientist in Sabeeha Merchant’s lab and first author of the article. The research team included scientists … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … (FICUS) collaborative science initiative between the JGI and EMSL.  …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… A group led by JGI scientists have made strides in improving and applying a … to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  Nature … our ability to offer host-engineering for our users,” says JGI Director Nigel Mouncey. Using CRAGE, JGI has established …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… JGI-led team significantly expands the global diversity of … metabolic features and putative hosts,” noted study senior author  Tanja Woyke , who heads JGI’s  Microbial Program . … the megabase range. The study’s lead and co-corresponding author Frederik Schulz, a research scientist in Woyke’s …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at UC … seminal Cas9 proteins cleave double-stranded DNA. Co-first author Lucas Harrington was a graduate student from study senior author Jennifer Doudna’s lab, and he worked with co-first …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… New 5-year strategic plan outlines how the JGI will advance the bioeconomy, leveraging partnerships to … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has released its newest 5-Year Strategic Plan: … requires a deep understanding of biological systems. The JGI strategic plan lays out how users and the global …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … for thousands of branches,” said Natalia Ivanova, senior author of the study and head of the JGI’s Microbiome … isolate genomes is clear cut,” said Rekha Seshadri, lead author of the study. “And even if one is agnostic to …
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