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… another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, … in terms of their natural products chemistry, and he has a project with the JGI to synthesize the genes for and explore … And it actually was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that …

… The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to the core set of "primary metabolites"—chemical … metabolites portal within the Integrated Microbial Genomes and Microbiomes (IMG/M) system known as IMG-ABC. …

… (UEC) represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users and their … To view the full roster of members visit the UEC page . …

… deep subsurface ecosystem. The Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in … of countering multiple attempts at virus infections. Their genomes include short DNA sequences that code for CRISPR … used to search for and find 13 additional predicted viral  genomes . The team dubbed these viruses Altivir, finding …

… Research uncovers the genetic foundations that helped plants conquer land over 600 million years … Laboratory (Berkeley Lab), scientists sequenced the genomes of four  Zygnematophyceae algae, which were isolated … in improving plant resilience and productivity. The algal genomes sequences are available on the JGI’s  PhycoCosm …

… Trained on environmental data, a new JGI tool more accurately … Berkeley National Laboratory (Berkeley Lab), led the project. He explained that large language models—artificial … methodologies developed for natural languages to study genomes,” Wang explained.  And since microbial genomes are …

… users through a BER data ecosystem.  A data ecosystem is a connected resource where data from different organizations is discoverable and accessible. Linking the resources of powerful institutions like the JGI, KBase, NCBI, NMDC, EMSL and the Protein … specifically optimized for high-performance computing environments. …

… has partnered with researchers around the world to map out genomes of rumen microbes. In 2018, through a JGI Community … researchers put together what they called the Hungate1000, a catalog of 410 rumen microbe genomes. The project relied upon resources from laboratories around the …

… clearly. The Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) … For the first time, a team has analyzed in parallel the genomes and transcriptomes of both partners to better … lichens. Studying the symbiosis by investigating a lichen’s genomes and transcriptomes could help inform efforts at …

… analysis of microbial, fungal, and plant research projects.  More recently, these long-reads have been applied … improved, but currently require input in the ~ 30 – 100ng range. Note that beyond quantity, input quality (i.e., … weight DNA) is an important factor as well for PacBio metagenomes. Q: How many PacBio metagenomes can I submit?  How …

… New genomes highlight the diversity of white rot fungi in the … genus Lentinula, which have evolved to decompose hardwoods on every continent besides Europe and Antarctica. A  new … around the world. By complete sequencing of 24 new mushroom genomes, and assembling genomes from 60 existing sequences, …