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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… Choice Awards . NERSC, JGI, ESnet are U.S. Department of Energy Office of Science user facilities. The HPCwire … Lab team comprised of JGI and ExaBiome Project team, supported by the DOE Exascale Computing Project. The award … release of MetaHipMer, an end-to-end genome assembler that supports “an unprecedented assembly of environmental …
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Styling for Safety: PPE, It’s the JGI Way
… Over the last few months, we found an increasing number of colleagues missing elements of the required PPE in the lab. To address this issue, we … to provide our colleagues with a visual representation of JGI PPE requirements. When working in the lab, it is … National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy generation …
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An Earth Month Look at Sustainability Efforts at the JGI
… Sustainable Berkeley Lab maintains a  calendar of Earth Month events throughout April. This year, a new group at the Lab, the Sustainable Garden Club, hosted a DIY … Succulent Workshop and Plant Sale. All year, the JGI helps support finding solutions to clean energy and environmental …
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JGI announces first round of 2023 New Investigator awardees
… is eager to work and share our tools with a widening circle of researchers. The JGI is eager to work and share our tools with a widening circle of researchers. That’s why twice each year we look for novel … under our Community Science Program.  Below find a list of the first 10 researchers accepted for 2023. Proposals are …
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A Community Resource for Secondary Metabolite Researchers
… user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … environment. Many secondary metabolites are produced by groups of genes known as biosynthetic gene clusters (BGCs.) As … principles and has tools that allow users to annotate or upload data, as well as to connect and collaborate with each …
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An Addiction Crucial to a Fungus’ Reproduction
… A fungus relies on bacteria to regulate key components of its reproductive machinery The Science To better … The work sheds light on a poorly understood group of oleaginous or oil-producing fungi, and the impact this … maize, and a part of the oil-producing Mucoromycotina group, about which little is known. The Cornell team cultivated …
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New Research Sheds Light on Diversity in the Deep Sea
… deep in the sea to get any sunlight, and yet they still support a unique array of microorganisms adapted to living in extreme conditions. … the availability of certain nutrients — influence the makeup and functioning of a given microbial community. … OCE-2049478 and DBI-2047598 to K.A. We thank the Department of Energy Joint Genome Institute (Community Science Program …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect them. But … interactions? Do generalist viruses run rampant, capable of infecting different host species? Or, do they tend to … virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then allowed the team to ask, for the 34 …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… di-GMP (Guanine Monophosphate) is found in nearly all types of bacteria and interacts with cell signaling networks that … role in regulating microbial cellulose production and biofilm formation, which affects a number of environments, including plants, soil, and the gut. To …
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Understanding Wildfire Recovery, Starting in Soil
… begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, … the microbes within the soil. To get a clearer picture of how burned ecosystems return to health, researchers have … The Impact Healthy forests store carbon, filter water, and support all kinds of plants and animals, but with climate …
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Gene Expression: From On-Off Switch to Dial
… to expression, scientists can now opt for various shades of grey. The ability to fine-tune the level of gene expression allowed researchers to identify variations of essential genes in metabolic networks that were missed … Institute, a DOE Office of Science User Facility, is supported under Contract No. DE-AC02-05CH11231. …
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iPHoP: A Matchmaker for Phages and their Hosts
… With metagenomic sequencing, researchers have found more of these viruses than ever before, in all kinds of ecosystems. However, matching these viral genetic … archaea and bacteria hosts. The Impact Within the domains of archaea and bacteria, millions of  microbes govern …
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