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… developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress … the interpretation of microbial, metagenomic, or plant genomes. [Download PDF] End-of-year Goal – Develop one new …

… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. … variation in haloarchaea, they also characterized metagenomes (collections of partial genomes) from six hypersaline Antarctic lakes. The Impact By … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …

… In this episode, undergraduates adopt genomes that the JGI sequenced, but never published in the literature. These students analyze the genomes, write reports, and publish first-author papers, … Escobar (California State San Marcos) about how the Adopt-A-Genome project got started. Plus, Kalyani Maitra (California …

… the largest interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of …

… Genomes from uncultivated bacteria offers clues to ancestral … teams joined forces and data sets to describe bacterial genomes for related (“sibling”) lineages Margulisbacteria … Paula Matheus Carnevali was working with a group of metagenome-assembled genomes (MAGs) dubbed Margulisbacteria, and …

… break down PCE into the chemical compound ethene. Applying genome sequencing and analysis, the researchers identified … were sequenced by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … data. (Data from the project are available on the  JGI Genome Portal .) The team has also been able to discover …

… organisms. The Science Researchers employed multiple microbiology and ‘omics techniques to experimentally determine … consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and … dependent on the other for required nutrients—is genome size. The obligate symbiont’s genome is often reduced …

…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The Science … of countering multiple attempts at virus infections. Their genomes include short DNA sequences that code for CRISPR … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …

… , along with Jenny Mortimer, Director of Plant Systems Biology at the Joint BioEnergy Institute (JBEI). Questions … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …

… at the Max Planck Institute (MPI) for Marine Microbiology has developed, tested and deployed a pipeline to … and then efficiently retrieve and characterize their genomes. The Impact Despite great strides in generating genome sequences for members of the microbial world through …

… has partnered with researchers around the world to map out genomes of rumen microbes. In 2018, through a JGI Community … they called the Hungate1000, a catalog of 410 rumen microbe genomes. The project relied upon resources from laboratories … Sinead Leahy and the JGI’s Rekha Seshadri in this JGIota, a Genome Insider podcast minisode. To date it is the single …

… mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and that dominant populations varied with … technologies and bioinformatic tools have helped decode the genomes of tens of thousands of previously unknown and … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …