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Gut Fungi: Unexpected Source of Novel Chemicals
… and help them digest their last leafy meal. In their evolutionary history, these fungi branched off early from aerobic … called natural products . Yet, combing through the genomes of four anaerobic fungal species has revealed, for … that these expressed genes translated into expected proteins. That work was done in collaboration with the …
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A Step Toward Controlling Soybean Rust
… Rust (ASR) and is the major pathogen of soybean. Left uncontrolled, soybean rust could reduce crop yields by as much as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio … Research (INRA)  proposed sequencing a reference genome for  P. pachyrhizi to develop better strategies to …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… list features 6,900 researchers working in 21 fields.  Congratulations to the  2022 Highly Cited Researchers from … the JGI is sequencing thousands of bacterial and archaeal genomes from diverse branches of the Tree of Life.  Its … into how soil viruses , and in particular a chitosanase protein, can contribute to soil health. He also contributed …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  … Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … analyses – as best we could, we tried to describe the protein domains every virus carries, and who is their likely …
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal … developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress … the interpretation of microbial, metagenomic, or plant genomes. [Download PDF] End-of-year Goal – Develop one new …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. … The Science Haloarchaea flourish in hypersaline environments, and researchers are interested in learning how … variation in haloarchaea, they also characterized metagenomes (collections of partial genomes) from six …
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PhycoCosm Tutorial
… Learn more about PhycoCosm, the largest interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of …
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Refining the Process of Identifying Algae Biotechnology Candidates
… biofuels seems fairly simple: place these algae in a container with access to sunlight, water and carbon dioxide … multiple institutions have sequenced and analyzed the genome of an alga that thrives in saltwater (halotolerant) … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy sources. More than two billion years ago, cyanobacteria acquired the ability to produce … teams joined forces and data sets to describe bacterial genomes for related (“sibling”) lineages Margulisbacteria …
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Honey Bee Gut Microbiota Divvy Up Dinner
… Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex … including collecting and analyzing the honey bee gut metagenome, which was done with the help of the US Department of Energy Joint Genome Institute.     … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… benefits to address climate change: pulling atmospheric carbon into soil and boosting biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in symbiosis with … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… polar oceans give rise to some of the largest food webs on Earth. And at their base are microscopic, photosynthetic … “Prokaryotes are not capable of producing all the juicy proteins and lipids that eukaryotes are.” But according to a … UEA and including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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