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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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Party in the Rhizosphere
… creating a lively zone called the rhizosphere. In this episode, biologist Jennifer Pett-Ridge of Lawrence Livermore …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… brings together established and emerging scientists from academia, industry, and government organizations for three days … and informal networking events. JGI will present both a genome center talk and a tech talk. Stop by the JGI booth to …
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Supercharging SIP in the Fungal Hyphosphere
… a commonly-used process for studying microbial communities, with results published in the  November 2022 issue … method to the study of a particular fungi, researchers identified novel interactions between bacteria and the fungi. … National Laboratory and the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at …
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Trent Northen
Since joining Berkeley Lab in 2008, Dr. Northen has had leadership roles within large DOE-funded research programs … Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes … … Metabolomics Science Program … Education … Selected Publications … Awards and Honors …
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JGIota: The Algae Nicknamed ‘Chlamy’
This shorter episode is about a tiny, single-celled alga – … works on this alga, how researchers managed to sequence its genome, and what it has to teach us about other organisms – …
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Exploring the Diversity of the American Prairie’s Switchgrass
… potential biofuel feedstock. But switchgrass has a complex genome and, as a species, encompasses dizzying diversity. So, a team of scientists made an ambitious plan to begin to link the plant’s varying … biomass, hardiness to cold, etc. — to its genes. The undertaking took shovels, trucks — and more than a decade.  …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
… of microbial communities in carbon cycling, in interactions with plants, and as drivers of methane production, nutrient … Genomics and Systems Biology Division, and JGI’s deputy for user programs. She also leads the JGI’s Microbial …
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Fungal Friends or Foes in Plant Roots
… plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated fungi. Their analysis identified fungal gene families that help determine if these …
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Integrating Experimentation with Data
…   Join the Joint Genome Institute (JGI) and the Environmental Molecular … Automated Laboratories: Integrating Experimentation with Data.” The event will take place at the Seattle … Waterfront in Seattle, Washington.   Topics will include:  environmental microbiomes biodesign and synthetic …
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A Natural Mechanism Can Turbocharge Viral Evolution
Understanding how a fundamental mechanism of evolution allows … a virus and microbial cell is an embrace. For a virus with a “head-tail” morphology, this means using proteins on … ago, a team discovered a group of viruses that had in their genomes a surprising tool: a “diversity generating …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… stretched by a growing human population and increasing demand for agricultural products.  Sorghum bicolor (L.) … Laboratory, and the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User … the mechanisms through which sorghum is equipped to deal with adverse environmental conditions, researchers hope to …
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