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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… A new view into a symbiosis could offer benefits to address climate … up close, using RNA sequencing to understand gene expression: one of the first cross-kingdom spatially-resolved … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… warm-adapted microbes edge polewards, they’d oust resident tiny algae. The cold polar oceans give rise to some of the … UEA and including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … microbiomes that influence algal diversity and gene expression. Sailing from pole to pole on four research …
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Eelgrass Proves to Be Much Younger Than We Thought
… The Science Eelgrass, one of the most abundant plants in the ocean, originated in Japan before spreading around … form of another species, so the scientists had to use the genome itself.   Approximately 67 million years ago, the ancestor to eelgrass underwent a whole genome duplication event, doubling all of its chromosomes.  …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to … proposal calls to the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … easier to compare?” said Malmstrom, who worked with JGI Metagenome Program head Emiley Eloe-Fadrosh to host researchers …
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PhycoCosm Tutorial
… Learn more about PhycoCosm, the largest interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of …
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Refining the Process of Identifying Algae Biotechnology Candidates
… to summary above^ as well ] The Science The recipe for growing algae as a source of sustainable biofuels seems fairly … multiple institutions have sequenced and analyzed the genome of an alga that thrives in saltwater (halotolerant) … and its transcriptome to learn more about which genes expression patterns. The analysis led to the identification of …
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JGI Announces 2023 Community Science Program Awardees
… Program call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … CSP Annual Call is focused on large-scale genomic science projects relevant to the DOE’s Office of Biological and …
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Fishing for Novel Cellulose Degraders
… A “bait and hook” single-cell genomic approach to bioprospecting. The Science … by Tanja Woyke at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … DNA synthesis and cloning, followed by protein in vitro expression and mass spectrometry-based enzyme activity assay. …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  video below, captions … through the  Community Science Program (CSP) . This includes mass spectrometry-based measurements of primary and … New Investigator and  Functional Genomics proposal calls, projects can request up to 50 polar and 150 nonpolar …
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Benjamin Cole
… Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the Joint Genome Institute, his focus was primarily on how plants … growth program, and on how plants coordinate their gene expression with light and temperature oscillations throughout …
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated microbes … and then efficiently retrieve and characterize their genomes. The Impact Despite great strides in generating … can then be made available to JGI users in order to address pressing energy and environmental scientific challenges. …
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JGI on the 2021 Highly Cited Researchers List
… among those recognized by Clarivate Analytics for demonstrating “significant influence in their chosen field or fields … Jeremy Schmutz Susannah Tringe Tanja Woyke Below are a few projects each of these researchers were involved in, … team that combined field data with a reference switchgrass genome to associate climate adaptations with switchgrass …
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