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… the largest interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of …

… partnered with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Program in order to get  M. elongata and  I. europaea  genomes sequenced and annotated for this study. The team … that lipids could act as a bridge of interkingdom communication between the plant and fungus. Discovering how …

… Genomes from uncultivated bacteria offers clues to ancestral … energy. As reported January 28, 2019 in Nature Communications , two research teams joined forces and data sets to describe bacterial genomes for related (“sibling”) lineages Margulisbacteria … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …

… sustain life’s processes.  Traditionally, mapping this intricate network of regulatory “switches” in plants at a large … to technical limitations and the sheer complexity of plant genomes. Now, with improvements to DNA Affinity Purification … paper and Technical Implementation Lead at the DOE Joint Genome Institute (JGI), a DOE Office of Science User …

… in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development … learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria. PLoS Biology … of hypermutation in the global microbiome. Nature Communications 12, 3076. Roux et al., 2018. Minimum Information …

… A new approach for improving functional annotation in fungal genomes. The Science In a proof-of-concept study, … can be harnessed for a wide range of biotechnological applications, including biofuel production. Efforts such as the … had their DNA sequenced at the JGI as part of a 2014 Community Science Program project. The results revealed …

… consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and … dependent on the other for required nutrients—is genome size. The obligate symbiont’s genome is often reduced compared to that of a free-living …

… single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, … A:  For the next call ( CSP New Investigator ), up to 4 long-reads (PacBio) metagenomes can be included, which do … library. Q: How much DNA/coverage is required for DNA modification detection? A:  DNA modification detection can only be …

… The architecture of these algorithms, inspired by communication networks found in nature, allows machines to “learn” … biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector … algorithm — a convolutional neural network, called  ResNet 34   — in order to vectorize protein sequences. Sevim is part …

… Biohub, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … and Verstraetearchaeota lineages. The archaeal genome was detected in samples collected by Stephen Quake’s … were then sequenced separately. From these samples, 111 metagenome-assembled genomes (MAGs) were recovered, most of them …

… the use of an ORCID account with two-factor authentication enabled to log in. Check our Help Site for additional … your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs are …

… in more nutrients to fuel growth. The Impact Over the last 40 years, summer sea ice in the Arctic has decreased by more … survival of the microorganisms that live there.  A  Communications Biology article highlights how one microalga … sequencing from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …