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Exploring the Diversity of the American Prairie’s Switchgrass
A tall native plant of the North American prairie, switchgrass ( Panicum virgatum ) has long been a tantalizing potential biofuel feedstock. But switchgrass has a complex genome and, as a species, encompasses dizzying diversity. …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
A two-day kick-off meeting held at Lawrence Berkeley National Laboratory … Research Center One Health Ruhr (OHR), and the DOE Joint Genome Institute (JGI), Molecular Biophysics and Integrated … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… and relevance to the DOE’s mission.  Have someone proofread your proposal to make sure the goals, experimental … file.     … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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2023 Progress Report
… for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… ice in the Arctic has decreased by more than 30% in terms of quantity and thickness. Replacing older, thicker ice with … sequencing from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … changing salinity of the environment. ( The annotated algal genome is available on the JGI’s PhycoCosm data portal.) …
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JGI Accepts 17 Proposals for Community Science Program
Interactions Within Ecosystems Latest portfolio of approved proposals highlight biodiversity and how … (CSP) call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … international collaboration that produced the reference genome sequence for Eucalyptus grandis. Accessing recently …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… tiny algae. The cold polar oceans give rise to some of the largest food webs on Earth. And at their base are … UEA and including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, … (uM etc).  … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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JGI-UC Merced Interns Share Their 2021 Experiences
During the summer of 2021, 13 interns from UC Merced spent eight weeks working … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Functional exploration of Phage Impact on … Lineage Specific Conserved Genes in Giant Viruses … Pan-genome Graphs: Approaches for Complete Categorization of …
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Gut Fungi: Unexpected Source of Novel Chemicals
The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest … called natural products . Yet, combing through the genomes of four anaerobic fungal species has revealed, for … could inform how scientists can more easily convert plants into carbon-neutral biofuels . What’s more, many natural …
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Streamlining Regulon Identification in Bacteria
… with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory … in Streptomyces coelicolor . The Impact As an integrative genome science user facility, connecting genes to functions … of the mission of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have revisited a … vital to facilitate the assembly of small DNA fragments into larger and coherent pieces called contigs — into genes and even into genomes — from these environmental samples,” said Matthias …
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