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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Benjamin Cole
… Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the Joint Genome Institute, his focus was primarily on how plants … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic … List of pubs available on NCBI …
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JGI Announces 2026 New Investigator Portfolio
… Pictured from left: [Top row]: Emily G. Aguirre, Shauna M. Bennett, Laura Bogar, Michael Borg, Rory … Kumar Gautam, Gareth Gillard, Audrey Goeckner, Jennifer Goff, Sarah Gonzalez Henao, Yang Hai, Julia G. Harenčár, … including metagenomics, metatranscriptomics and genome assembly to investigate microbial and plant …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… Bacterial enzymes play second fiddle to those from fungi when … analyzing the enzymes present in the complex organic matrix of the forest floor, a team of researchers have found that … to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from …
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Crysten Blaby-Haas
… Dr. Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular Materials Initiative, a partnership … user capability between the JGI and Molecular Foundry for genome-encoded biomaterial discovery, design, and … PhD, Microbiology and Cell Science, University of Florida NIH Postdoctoral …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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JGI on the 2020 Highly Cited Researchers List
… Congratulations to the 2020 Highly Cited Researchers at the JGI! … fields over the last decade, demonstrated by the production of multiple highly-cited papers that rank in the top 1% by … a consortium that  released a very high quality reference genome sequence of green millet ( Setaria viridis ) in  …
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JGI Workshop at SIMB NP Meeting
… Jan. 7: New Capabilities to Study Secondary Metabolism   Although there are still a large number of secondary metabolites yet to be discovered and their … a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and … Institute.  The Science Researchers report the discovery of miniature Clustered Regularly Interspaced Short … possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by …
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Extracting the Secrets of Secondary Metabolites
… CRAGE-CRISPR combo helps further demystify biosynthetic gene … survival, may now be easier to characterize following a proof-of-concept study in which researchers paired CRISPR and … Repeats) is the leading tool for accurately editing genomes, its effectiveness has historically been limited due …
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2025 NeLLi Symposium
…   Registration has closed   Registration fees: Regular attendees  … students and postdocs): $250      Hosted by the DOE Joint Genome Institute, the University of Nevada, Las Vegas, and the Desert Research Institute, the … The NeLLi Symposium will take place at The Marjorie Barrick Museum of Art at the …
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