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Viruses Reprogram Cells into Different Virocells
But if the duck gets infected by a virus so that it no longer looks or quacks like one, is it still a duck? For a … between the  U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … predictive ecosystems models. Next, the researchers are working towards better understanding how nutrient …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
A two-day kick-off meeting held at Lawrence Berkeley National Laboratory (Berkeley Lab) marked the visit of an … Research Center One Health Ruhr (OHR), and the DOE Joint Genome Institute (JGI), Molecular Biophysics and Integrated … knowledge and address global challenges.”  During the workshop UDE and Berkeley Lab scientists discussed a diverse …
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Simon Roux
… in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development of novel computational … et al., 2023. iPHoP: An integrated machine learning framework to maximize host prediction for metagenome-derived …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… polar oceans give rise to some of the largest food webs on Earth. And at their base are microscopic, photosynthetic … UEA and including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … this fundamental observation of cold and warm microbial networks, and just how clear and stark the biogeographic …
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The Fungi That Survive In Antarctica
They survive everywhere from Antarctica to Joshua Tree National Park, despite extremely harsh conditions. And their survival secrets could one day help … Tuscia researchers Laura Selbmann and Claudia Coleine are working with scientists from around the world – and the JGI …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
Lake Mendota sits right next to the University of Wisconsin, Madison. And Trina McMahon's lab has been sampling … over 20 years, to understand how the freshwater ecosystem works.  So a few years ago, when they set out to analyze 500 metagenomes, it was the biggest project the JGI had ever put …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this episode: a look at the … (NERSC) has another supercomputer, Perlmutter that works at large scale. But nearby the JGI, a cluster called …
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Krishna Palaniappan
Krishna is responsible for the design and maintenance of the Integrated Microbial Genomes (IMG) data warehouse, and integration of genomic and metagenomic data with transcriptomics and …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have … Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. Along … the world, finding over 125,000 partial and complete viral genomes. That study multiplied the number of known viral …
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Crysten Blaby-Haas
… and Cell Science in 2011 from the University of Florida, working with Valérie de Crécy-Lagard on using comparative genomics to predict gene function in … user capability between the JGI and Molecular Foundry for genome-encoded biomaterial discovery, design, and …
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JGI Workshops at PAG
Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   With … breadth of algal diversity, the numbers of sequenced algal genomes, and the quality of those genomes, is rising. The purpose of this Workshop is to illustrate the expansion of this field and bring it to the attention of the wider …
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Uri Neri
Uri Neri is a computational biologist who spends his days wrangling viral genomes and occasionally remembering to document his code. At JGI, he develops …
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