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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… The Sequence to Function: Applications and Analysis for the Future (SFA²F) meeting brings … and informal networking events. JGI will present both a genome center talk and a tech talk. Stop by the JGI booth to …
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Anuvia taps JGI for expertise to pinpoint products from beneficial soil microbes
… bioenergy security for a steadily growing worldwide population. Anuvia Plant Nutrients , a small Florida business producing bio-based plant nutrition products that target soil enrichment, is partnering with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Learning to Look
… expands inovirus diversity. To answer the question, “Where’s Waldo?” readers need to look for a number of … by scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … are filamentous viruses with small, single-stranded DNA genomes and a unique chronic infection cycle. “We’re not …
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Exploring the Diversity of the American Prairie’s Switchgrass
… American prairie, switchgrass ( Panicum virgatum ) has long been a tantalizing potential biofuel feedstock. But switchgrass has a complex genome and, as a species, encompasses dizzying diversity. …
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Extracting the Secrets of Secondary Metabolites
… biosynthetic gene clusters.  The Science Microbial secondary metabolites, those molecules not essential for growth … Repeats) is the leading tool for accurately editing genomes, its effectiveness has historically been limited due … CRAGE (Chassis-independent Recombinase-Assisted Genome Engineering) is a technique researchers can use to …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  Nature Microbiology an important addition to the synthetic biologist’s toolkit: a technique for  c … of DNA (up to 60 kb) in a single step, directly into the genome. “CRAGE is central to our ability to offer …
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How Maize Makes An Antibiotic Cocktail
… a family of compounds that protects it against infections — using surprisingly few enzymes. The Science Maize ( … protect maize by fending off fungal and microbial infections. Scientists had assumed that maize synthesizes these … synthesized by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help or harm … plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated fungi. Their analysis … was funded by the U.S. Department of Energy (DOE) Joint Genome Institute, a DOE Office of Science User Facility, and …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome Institute. His team of engineers and scientists … the data and compute platforms and bioinformatics annotation pipelines that support JGI’s portals, tools, and the …
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Rex Malmstrom
… is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth rates and carbon consumption of SAR11 bacteria, the most abundant … genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His group also handles the …
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Simon Roux
… in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development of novel computational tools to identify virus sequences, the design of new … Pascal, France Ph.D. in Bioinformatics, Ecology and Evolutionary Biology, Université Blaise Pascal, France …
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Integrating Experimentation with Data
…   Registration for this meeting has closed           Registration fees:                   General attendees: $500    … $250     Industry: $700    Thanks for joining the Joint Genome Institute (JGI) and the Environmental Molecular … are U.S. Department of Energy (DOE) Office of Science national scientific user facilities dedicated to advancing …
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