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… at Cornell University and scientists at the Joint Genome Institute, a DOE Office of Science User Facility was … while the DOE JGI team sequenced and annotated a host genome (Rm ATCC 52813) as part of the 1000 Fungal Genomes … As reported in the November 29, 2017 issue of Nature Communications , the team found that the fungus is highly dependent …

… Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … through computational approaches. By mining more than 14,000 publicly available metagenomic datasets in JGI’s  … unique MCP sequences.  Further analysis led to the identification of 328 “high quality” (based on completeness) diverse …

… mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and that dominant populations varied with … respect to the amount of within species recombination, indicating variation in gene flow between the analyzed community … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …

…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The Science … of countering multiple attempts at virus infections. Their genomes include short DNA sequences that code for CRISPR … sequences are virus fragments called spacers, that indicate repelled attempts to infect and lyse the microbial …

… from its beginnings in the sequencing for the Human Genome Project out to the future of the institution. Their … very first project — the revolutionary work of the human genome project, which spanned nearly two decades, was filled … testament to the collective impact of motivated and dedicated employees: “Nigel [Mouncey] and his team have …

… archaea and eukaryotes, and they range in particle and genome size from small, to large and even giant. The genomes … Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley … a barcode to sift out virus fragments, reconstructing 2,074 genomes of large and giant viruses. More than 50,000 …

… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … that “taught” a computer how to classify 101 representative genomes of Dothideomycetes, the largest class of fungi, by … Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley …

… Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley … different environments. He’s been involved in several plant genome projects through the Community Science Program. As a …

… a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from available genome sequences. The DOE Joint Genome Institute (JGI), a DOE Office of Science User …

… systems could become more sustainable through applications of microbiome science; our water quality, our water … not occurring at that pace, right. And then, hopefully, 3-400 years down the road we’ll have a steady state where we … this rapid shift in population and the environmental implications of it. I mean, that’s, that’s today. I teach a class …

… to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from … The transcriptomes edit out these distractions. Combining genome and transcriptome information allowed the team to … Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory, to create …