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An Automated Tool for Assessing Virus Data Quality
… CheckV can help researchers assess virus sequence fragments and data … recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … data, which limits the ability of researchers to accurately perform functional assessment, host prediction, …
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Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days
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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … genome sequences 10-fold through computational approaches. By mining more than 14,000 publicly available metagenomic … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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The complete iodine and nitrogen nuclear electric quadrupole coupling tensors for fluoroiodoacetonitrile determined by chirped pulse Fourier transform microwave spectroscopy
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JGI Workshop at SIMB NP Meeting
… Jan. 7: New Capabilities to Study Secondary Metabolism   … of biosynthetic gene clusters (BGCs) in native hosts, the complexity of cloning and expressing a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from …
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Taking Stock of the Known and Unknown Microbial Space
… Metagenomic datasets could help map out microbial diversity … technologies have led to an abundance of microbial genomes becoming available to the global research … expanded the known diversity of microbial genomes, accounting for nearly 49% of the total estimated bacterial …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences … four letters represents an organism’s genetic code, or genome, which underlies physical features and functions. … sequencing or DAP-seq. The technology was developed by Ronan O’Malley , who leads the Sequencing Technologies …
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Eelgrass Proves to Be Much Younger Than We Thought
… Recent study shows eelgrass has been around about 2.5 million years less than … — with many key colonization events in the Atlantic ocean occurring within the last 40,000 years. The Impact Eelgrass … form of another species, so the scientists had to use the genome itself.   Approximately 67 million years ago, the …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… Antarctic algae need their vitamins; zinc fuels some of … phytoplankton play an outsize role in cycling carbon and nutrients. These microscopic algae have managed to adapt … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… This year’s list features 6,900 researchers working in 21 fields.  … the JGI is sequencing thousands of bacterial and archaeal genomes from diverse branches of the Tree of Life.  Its … non-polar oceans.   The reasons behind C-fern’s size and complexity revealed : C-fern is typical of most ferns in …
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A Synthetic Gene Library Yields a Previously Unknown Glycoside Phosphorylase That Degrades and Assembles Poly-β-1,3-GlcNAc, Completing the Suite of β‑Linked GlcNAc Polysaccharides
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