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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
National Ecological Observatory Network (NEON) is a network of field research sites designed to collect long-term open … available for research over 100,000 samples and specimens of over 60 different types of NEON samples and specimens per … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect them. But … a more systematic picture through single-cell and metagenomic sequencing. A team co-led by Mária Džunková, … virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then allowed the team to ask, for the 34 …
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Supercharging SIP in the Fungal Hyphosphere
The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial … with results published in the  November 2022 issue of Microbiome . High-throughput stable isotope probing (SIP) … and improve results. Applying this method to the study of a particular fungi, researchers identified novel …
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iPHoP: A Matchmaker for Phages and their Hosts
… hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these viruses than ever before, in all kinds of … integrated prediction a confidence score. The result is a genus-level host prediction tool that draws on the strengths …
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Identifying the Microbial Cleanup Crew at a Superfund Site
PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via leakage from a … bioremediate toxic substances has led to the development of cost-effective environmental cleanup strategies. Summary … Program , they were able to analyze the resulting metagenomic data. (Data from the project are available on the  …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are … by combining a study of microbial communities (metagenomics) and a chemical labelling approach. The Impact … viruses had been previously identified. The JGI researchers surveyed publicly available data in the JGI’s  IMG/M …
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