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2025 NeLLi Symposium
… and Agenda Coming Soon!  Hosted by the DOE Joint Genome Institute, the University of Nevada, Las Vegas, and … cultivating new Bacteria and Archaea revealed by a recent genome census . Speakers John M. Archibald (Keynote) …
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Yasuo Yoshikuni
… production of biofuels and renewable chemicals, developing genome engineering tools for non-model organisms, modulating …
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Fungal Friends or Foes in Plant Roots
… plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated fungi. Their analysis … (INRAE) and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Extracting the Secrets of Secondary Metabolites
Repeats) is the leading tool for accurately editing genomes, its effectiveness has historically been limited due … CRAGE (Chassis-independent Recombinase-Assisted Genome Engineering) is a technique researchers can use to … then employ CRISPR in a variety of microbial hosts. Summary Photorhabdus luminescens proves fatal to insects. It is …
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Integrating Experimentation with Data
…   Join the Joint Genome Institute (JGI) and the Environmental Molecular …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  … of DNA (up to 60 kb) in a single step, directly into the genome. “CRAGE is central to our ability to offer … engineering system that allows scientists to conduct genome-wide screens and explore biosynthetic pathway. Thus …
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Trent Northen
Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes … Wang G et al. Chassis-Independent Recombinase-Assisted Genome Engineering Enables Rapid Activation of Biosynthetic …
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Pinning Down a Piece of Photosynthesis
… protein, researchers have new insights into how these ocean photosynthesizers cycle carbon in changing conditions. The … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … as well. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Accelerating Metagenomics Discoveries with Deep Learning
… biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector … to vectorize protein sequences. Sevim is part of the JGI Genome R&D Group and is one of more than 100 scientists and … contigs (inferred chromosomal sequences in mixed-genome samples) with a new tool called MetaGNN (Prashant …
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Dealing with Drought: Uncovering Sorghum’s Secrets
Laboratory, and the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User … usable for conventional food crops. For that reason, its genome was sequenced by the JGI in 2009 and it is considered … Some different responses relate to functioning of the photosynthetic machinery, which requires water to function. …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
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Triggering Morel Fruiting
Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … external source.  The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information … were sequenced and annotated by a collaborative team. The genome sequences and annotations are available on JGI’s …
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