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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the … around the world. By complete sequencing of 24 new mushroom genomes, and assembling genomes from 60 existing sequences, … Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley …
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Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae
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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov.,
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How to Target a Microbial Needle within a Community Haystack
… and then efficiently retrieve and characterize their genomes. The Impact Despite great strides in generating genome sequences for members of the microbial world through … Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley …
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JGI@25: Building a Better Bean
… of the University of Georgia sequenced and analyzed the genome of the common bean. That work was published online … The team sequenced and assembled a 473-million basepair genome of the common bean, identifying genes related to … flowering time, nitrogen metabolism, seed weight and domestication. Six races of the common were identified, three from …
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Marine Microbe Contains Multitudes
… periodically at different depths. In order to determine the genome structure of SAR324 cells and their gene expression, the team then sequenced community genomes and expressed gene transcripts (metagenomes, … Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. … variation in haloarchaea, they also characterized metagenomes (collections of partial genomes) from six … variation in haloarchaea across East Antarctica. The implications of the current study are important both to …
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Cataloging the Microbes that Manage the Health of River Systems
… Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds … watershed scale models to manage river ecosystems. One application for the information is the development of river … National Laboratory. The JGI sequenced over 1,000 metagenomes and established standardized sequencing protocols so …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… to “plant destroyer” and it has served as just that on a catastrophic scale from Baja California north into Oregon … trace its origins, the researchers engaged the DOE Joint Genome Institute (JGI), with support of the US Department of … effort was to decode the complex Phytophthora ramorum genome. The JGI generated the organism’s DNA code in tandem …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… enabled by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley … the original methanogens were, but they were discovered by genome sequencing, which is a much less biased approach to …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… host bacteria Rhodospirillum rubrum . Their work in Nature Catalysis details an enzyme system that was previously only … they worked with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … how such inter-Facility collaborations through the Genomes to Structure and Function focus area of the JGI’s …
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