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Training the Next Generation of Talent
… his summer research at the U.S. Department of Energy Joint Genome Institute (DOE JGI), a DOE Office of Science user facility, Keedrian Olmstead was back on campus at the University of California, Merced to start … DOE JGI that provide hands-on experience in cutting-edge genome research and apply experimental and computation tools …
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal … developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress … the interpretation of microbial, metagenomic, or plant genomes. [Download PDF] End-of-year Goal – Develop one new …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. … The Science Haloarchaea flourish in hypersaline environments, and researchers are interested in learning how … variation in haloarchaea, they also characterized metagenomes (collections of partial genomes) from six …
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Adopt-A-Genome
… In this episode, undergraduates adopt genomes that the JGI sequenced, but never published in the literature. These students analyze the genomes, write reports, and publish first-author papers, … State Fresno) and two students, Angela and Mark Soghomonian share what it was like to take on one of these …
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PhycoCosm Tutorial
… Learn more about PhycoCosm, the largest interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of …
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Refining the Process of Identifying Algae Biotechnology Candidates
… biofuels seems fairly simple: place these algae in a container with access to sunlight, water and carbon dioxide … multiple institutions have sequenced and analyzed the genome of an alga that thrives in saltwater (halotolerant) … and its transcriptome to learn more about which genes expression patterns. The analysis led to the identification of …
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Supercharging SIP in the Fungal Hyphosphere
… stable isotope probing helps ID novel interactions between bacteria and fungi The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial communities, with … National Laboratory and the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… attendees joined the JGI Annual Genomics of Energy & Environment Meeting.  A wide array of invited speakers shared how … developments – has advanced their work on the world’s most pressing energy and environment challenges. The JGI offers … address of the 2023 JGI Annual Meeting. As the JGI’s Metagenome Science Program Head, Emiley Eloe-Fadrosh, introduced …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… reveals the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection … break down PCE into the chemical compound ethene. Applying genome sequencing and analysis, the researchers identified … were sequenced by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have … of those shared by both humans and flowering plants). Its genome also contains hundreds of genes uniquely associated … of Chlamydomonas reinhardtii in 2003; then in 2007 the full genome was sequenced and published in the journal Science . …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for data contextualization The Science Since its launch 25 years ago, the  Genomes OnLine Database has matured from six projects on a … U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office …
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Benjamin Cole
… interested in studying how plants interact with their environment. Prior to joining the Joint Genome Institute, his focus was primarily on how plants … growth program, and on how plants coordinate their gene expression with light and temperature oscillations throughout …
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