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Low-abundance populations distinguish microbiome performance in plant cell wall deconstruction
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A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cells
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Frederik Schulz
Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of … employs multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to …
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Identification of candidate genes in Arabidopsis and Populus cell wall biosynthesis using text-mining, co-expression network analysis and comparative genomics
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Identification of functional single nucleotide polymorphism of Populus trichocarpa PtrEPSP‐TF and determination of its transcriptional effect
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Boosting Small Molecule Production in Super “Soup”
Do metabolic pathways from engineered yeasts still work in cell-free environments? (Spoiler: Yes.) Think of cells as … Program at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Accelerating Metagenomics Discoveries with Deep Learning
DNA sequencing data gathered from whole samples rather than single cells or isolated strains, is easy to generate, but … Deep learning algorithms can vectorize faces… … so, why not proteins?         … The U.S. Department of Energy …
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Jeremy Schmutz
Mr. Schmutz’s involvement with the DOE Joint Genome Institute dates back to 1997, when he was working for … of the human genome project in 2003, he developed sequencing, assembly, and improvement strategies for de novo … science for JGI Plant Flagship Genomes and DOE relevant cellulosic feedstocks. Schmutz provides scientific project …
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Tracking heavy water (D2O) incorporation for identifying and sorting active microbial cells
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Exometabolomics and MSI: deconstructing how cells interact to transform their small molecule environment
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High-resolution genetic mapping of allelic variants associated with cell wall chemistry in Populus
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Advancements in the application of NanoSIMS and Raman microspectroscopy to investigate the activity of microbial cells in soils
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