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Targeted single‐cell sequencing
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JGIota: Sequencing Shiitakes with David Hibbett
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… factors and mechanics of gene expression in over 400 fungi species. “Fungi are the masters of adaptation,” Wint … the most efficient at making proteins likely factors into why fungi have been so evolutionary and ecologically … applications, Wint also developed and tested a gene sequence-based predictor of gene expression levels using …
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Taking Stock of the Known and Unknown Microbial Space
… genomic biodiversity. Using publicly available genome sequence data generated over the past three decades, their … group. “Turns out that despite all the genomes we've sequenced, we've only scratched the surface.” The study, … “It’s a reminder of the urgency to cultivate new microbial species.” Targeted Explorations for Understanding the …
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Cupriavidus agavae sp. nov., a species isolated from Agave L. rhizosphere in northeast Mexico.
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An Improved Method of RNA Isolation from Loblolly Pine (P. taeda L.) and Other Conifer Species
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Cave Thiovulum (Candidatus Thiovulum stygium) differs metabolically and genomically from marine species
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Genome analysis reveals diverse novel psychrotolerant Mucilaginibacter species in Arctic tundra soils
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The genomic footprints of wild Saccharum species trace domestication, diversification, and modern breeding of sugarcane
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JGI Scientists Pen Genome Watch Articles
… Institute in the UK — a nonprofit that was founded to help sequence the human genome. Today, the Sanger Institute … hot topics in genomics.” And it makes sense to Woyke why JGI would have this role. “We work with leaders in …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The … through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact The class  Dothideomycetes includes …
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Tracing the Evolution of Shiitake Mushrooms
… mushroom genomes, and assembling genomes from 60 existing sequences, this work expands the family tree for Lentinula. … as well as atmospheric carbon dioxide.  Summary Researchers sequenced 11 samples from Asia–Australasia and 13 samples … from the Americas to trace the evolution of Lentinula species.The Lentinula genus diverged roughly 28 million …
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