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Taking Stock of the Known and Unknown Microbial Space
… genomic biodiversity. Using publicly available genome sequence data generated over the past three decades, their … group. “Turns out that despite all the genomes we've sequenced, we've only scratched the surface.” The study, … “It’s a reminder of the urgency to cultivate new microbial species.” Targeted Explorations for Understanding the …
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Improving the Cacao Genome and Phytozome
… to climate change and devastating fungal infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years … through the Cacao Genome Database project. The genome sequence was assembled by the plant team at the  HudsonAlpha …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The … through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact The class  Dothideomycetes includes …
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Tracing the Evolution of Shiitake Mushrooms
… mushroom genomes, and assembling genomes from 60 existing sequences, this work expands the family tree for Lentinula. … as well as atmospheric carbon dioxide.  Summary Researchers sequenced 11 samples from Asia–Australasia and 13 samples … from the Americas to trace the evolution of Lentinula species.The Lentinula genus diverged roughly 28 million …
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The Power of One, Amplified
… community was similar across sequencing approaches, that species specific sets of single cells harbored mobile … snippets of microbial genomes directly from environmental sequence data, by piecing each genome together from large mixtures of genomic sequences. A complementary approach to this is single cell …
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Comparative genomic analysis reveals evidence of two novel Vibrio species closely related to V. cholerae
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The genome of Geobacter bemidjiensis, exemplar for the subsurface clade of Geobacter species that predominate in Fe(III)-reducing subsurface environments.
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DNA Methylation in Ensifer Species during Free-Living Growth and during Nitrogen-Fixing Symbiosis with Medicago spp.
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Single-cell genomics reveals features of a Colwellia species that was dominant during the Deepwater Horizon oil spill
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Mechanisms of Manganese(II) Oxidation by Filamentous Ascomycete Fungi Vary With Species and Time as a Function of Secretome Composition
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Microbial species and intraspecies units exist and are maintained by ecological cohesiveness coupled to high homologous recombination
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Host species and geographic location shape microbial diversity and functional potential in the conifer needle microbiome
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