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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline

… Every year, the JGI sequences around 35,000 samples — from plants, algae, …

Transcriptome analysis of Brachypodium during fungal pathogen infection reveals both shared and distinct defense responses with wheat

Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data

Comprehensive genomic and transcriptomic analysis of polycyclic aromatic hydrocarbon degradation by a mycoremediation fungus, Dentipellis sp. KUC8613

Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion

Comparative analysis of the transcriptomes of Populus trichocarpa and Arabidopsis thaliana suggests extensive evolution of gene expression regulation in angiosperms

Construction of a medicinal leech transcriptome database and its application to the identification of leech homologs of neural and innate immune genes

A multi-omic survey of black cottonwood tissues highlights coordinated transcriptomic and metabolomic mechanisms for plant adaptation to phosphorus deficiency

Horizontal gene transfer of the Mer operon is associated with large effects on the transcriptome and increased tolerance to mercury in nitrogen-fixing bacteria

JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom

Improving the Cacao Genome and Phytozome

… Cocoa Organization (ICCO), global cocoa bean production in 2017-2018 was 4.6 million metric tons . The global … to climate change and devastating fungal infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years … through the Cacao Genome Database project. The genome sequence was assembled by the plant team at the HudsonAlpha …

Refining the Process of Identifying Algae Biotechnology Candidates

… Researchers collaborating across multiple institutions have sequenced and analyzed the genome of an alga that thrives in … feedstocks, algae are tiny but mighty. An analysis in the 2017 Bioeconomy Report estimated that the United States has … involved in responding to various stresses, and its transcriptome to learn more about which genes expression …

Lawrence Berkeley National Laboratory is a U.S. DOE Office of Science
national laboratory managed by the University of California.