Results

A Collaboration to Improve Plant Genome Annotations Across Species
… 17 research groups. The team set out to characterize the transcriptome – the complete set of RNA molecules … Schmutz is the Plant Program Lead at the JGI. Sarah:  Why is a resource like this important to the field of plant … plants did you all look at? Avinash: We started off with 12 plants, which are JGI Flagship Plants, mostly related to …
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Architecture of thermal adaptation in an Exiguobacterium sibiricum strain isolated from 3 million year old permafrost: A genome and transcriptome approach
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Comparative genomics, proteomics and transcriptomics give new insight into the exoproteome of the basidiomycete Hebeloma cylindrosporum and its involvement in ectomycorrhizal symbiosis
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Homoeolog expression divergence contributes to time of day changes in transcriptomic and glucosinolate responses to prolonged water limitation in Brassica napus
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Laminarin stimulates single cell rates of sulfate reduction whereas oxygen inhibits transcriptomic activity in coastal marine sediment
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Matt Blow
Dr. Blow joined the JGI in 2009, and currently heads the User Support Analysis group. … Sanger Institute and Cambridge University University in 2005, where he studied RNA editing and cancer genetics. Dr. … develops automated pipelines for analysis of resequencing, transcriptome, epigenome and other functional genomics …
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Refining the Process of Identifying Algae Biotechnology Candidates
Researchers collaborating across multiple institutions have sequenced and analyzed the genome of an alga that thrives in … feedstocks, algae are tiny but mighty. An analysis in the 2017 Bioeconomy Report estimated that the United States has … involved in responding to various stresses, and its transcriptome to learn more about which genes expression …
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Transcriptomic Data Sets for Zymomonas mobilis 2032 during Fermentation of Ammonia Fiber Expansion (AFEX)-Pretreated Corn Stover and Switchgrass Hydrolysates
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Transcriptomic and genomic effects of gamma-radiation exposure on strains of the black yeast Exophiala dermatitidis evolved to display increased ionizing radiation resistance
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JGI@25: Strengthening Soybean
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … impressive environmental and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program. … first legume species with a published complete draft genome sequence. At the time, the vital global source of both …
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Annotation survey and life-cycle transcriptomics of transcription factors in rust fungi (Pucciniales) identify a possible role for cold shock proteins in dormancy exit
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Genomics and Transcriptomics Analyses of the Oil-Accumulating Basidiomycete Yeast Trichosporon oleaginosus: Insights into Substrate Utilization and Alternative Evolutionary Trajectories of Fungal Mating Systems
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