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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
A nuanced understanding of peat moss drives insight into carbon storage   The … hills and valleys, on a smaller scale. Depending on the species, some sphagnum may prefer the dryer, more elevated … Laboratory, and the HudsonAlpha Institute for Biotechnology sequenced sphagnum  genomes from plants selected by a team …
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Evolution of a Fungal Gene Expression Regulator
Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or G in a genome sequence can lead to changes in protein structures and …
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JGIota: Looking Back at Sequencing for Soybeans
The soybean is a crop that could boost biofuels and fertilize fields. So in 2010, the JGI helped publish the original genome sequence for the soybean, Glycine max. With a full genome sequence, researchers have been able to look into soybean’s …
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Identification of candidate genes in Arabidopsis and Populus cell wall biosynthesis using text-mining, co-expression network analysis and comparative genomics
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Comparative Analysis of 126 Cyanobacterial Genomes Reveals Evidence of Functional Diversity Among Homologs of the Redox-Regulated CP12 Protein    
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Comparative genomic analysis of the gut bacterium Bifidobacterium longum reveals loci susceptible to deletion during pure culture growth
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Doubling Down on Known Protein Families
… online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … Research Center  Alexander Fleming. “This was a massive analysis of 1.3 billion proteins with massively parallel … the process hinges on referencing to existing genome sequences.  Some of these proteins are what the scientists …
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Jeremy Schmutz
… human chromosomes 5, 16, and 19. Following the completion of the human genome project in 2003, he developed … de novo plant assembly and the post-genome computational analysis at HudsonAlpha. … Jeremy Schmutz is the Plant … Bennetzen, JL & Schmutz, J et al. 2012. Reference genome sequence of the model plant Setaria. Nature Biotechnology …
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Sequencing and Analysis of the Entire Genome of the Mycoparasitic Bioeffector Fungus Trichoderma asperelloides Strain T 203 (Hypocreales)
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… (Berkeley Lab), has produced a high-quality reference sequence of the complex switchgrass  genome using samples … a combination of really cutting-edge genomics and genetic analysis with large scale data collection,” he added. Jeremy … many parts of the country also helped the team understand why some switchgrass plants from the Northeast have traits …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
Center, JGI staff worked around the clock to generate the sequences of these three chromosomes. In 2004, they … J., Martin, J., Terry, A. et al. The DNA sequence and comparative analysis of human chromosome 5. Nature. 431, 268–274 (2004). …
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JGI@25: Using Team Science to Build Communities Around Data
In honor of the JGI's 25th anniversary in 2022, we have revisited a … Spatafora of Oregon State University led the effort to sequence 1000 fungal genomes to create two reference genomes … of Georgia, along with 100 of his colleagues in the comparative plant genomics community. The project’s aim is …
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