Results

Transcriptional response of the white-rot fungus Dichomitus squalens to polysaccharides reveals a co-expression network of plant biomass conversion related genes
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Micro-Scale Applications Group
… The Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of … The JGI uniquely offers the first quantitative Stable Isotope Probing (SIP) Metagenomics pipeline … access to cutting-edge cell sorting, DNA amplification, and sequence analysis to recover the genomes of uncultivated …
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A Complex Confection Decoded: Sugarcane Reference Genome
… Sugarcane was the last major crop without a reference quality … Community Science Program; in 2018, a monoploid reference sequence of sugarcane was published as a step forward in … that durable resistance to brown rust disease caused by the fungus,  Puccinia melanocephala . This plant pathogen used …
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The ectomycorrhizal fungus Paxillus involutus converts organic matter in plant litter using a trimmed brown‐rot mechanism involving Fenton chemistry
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Salicylic acid activates poplar defense against the biotrophic rust fungus Melampsora larici‐populina via increased biosynthesis of catechin and proanthocyanidins
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Chromosome-scale Genome Assembly of the Most Abundant Ectomycorrhizal Fungus Cenococcum Geophilum Reveals Massive TE Expansion and RIP Defense Mechanism
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome … metagenomes can I submit?  How deeply are metagenomes sequenced? A:  For the next call ( CSP New Investigator ), … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of … Phylogenetic diversity estimates show that the gap between cultivated and uncultivated … is also reflected in the strongly biased representation of sequenced genomes in the public domain, the bulk of which …
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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and … of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural … Deep learning algorithms can vectorize faces… … so, why not proteins?         …
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Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass
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FICUS
… The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique … Proposals for the annual FICUS call with EMSL begin with a Letter of Intent (LOI) … After an LOI is accepted, the researcher then submits a proposal … Shining a Light: Advanced Photon Source Capabilities for FICUS …
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You Can Move, But You Can’t Hide
… Researchers at the JGI develop a tool to quickly and accurately … MGEs based upon their gene content and their genetic sequences. The software was created by researchers under the … produce new chemicals. They can also affect ecosystems by killing other cells. Over time, MGEs can help microbes gain …
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