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JGI Earth Month: Wetlands Work in #TenHundredWords
April marks both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re …
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2024 Progress Report
The Integrative Genomics Building (IGB) seen above is home to the DOE … user service and workforce development. As of February 2025, we have already completed 37% of the two-year milestones, and 11% of the five-year milestones. … Highlights arising from …
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Fishing for Novel Cellulose Degraders
… for fly fishing is a boxful of lures. Designed with feathers or wires to mimic an insect or a particular movement, … National Laboratory (Berkeley Lab). Using a single-cell screen, they can now identify microbes with specific … small pools, followed by whole genome amplification and shotgun sequencing. The team first tested the approach on …
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Tanja Woyke
… and assumed the Deputy Director of User Program position in 2021. In addition to her JGI appointment, she also holds an … Visiting Committee), NASA Exobiology.  … Volland et al. 2022. A centimeter-long bacterium with DNA contained in … Nature Biotechnology 35, 725-731. Mukherjee et al. 2017. 1,003 reference genomes of bacterial and archaeal isolates …
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Simon Roux
His responsibilities include the development of novel computational tools to identify virus sequences, the design of new … and virus-host interactions in microbial systems. Through a 2021 DOE Early Career Research Program, Dr. Roux established … reveals diverse clades of bacteriophages. Cell 185, 4023–4037. Coclet et al., 2023. Virus diversity and activity is …
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Forming Scientific Connections and Building Community
The 11th cohort of JGI-UC Merced interns pick highlights from … DOE Office of Science User Facility, hosted three undergraduates and seven graduate students from UC Merced through their long standing internship program. In just two months, the students participated in …
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Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome
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Rex Malmstrom
… is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the … of in situ growth rates and carbon consumption of SAR11 bacteria, the most abundant bacterial group in the ocean. … for stable isotope probing metagenomics. mSystems 8:e01280-22. Volland et al. 2022.   A centimeter-long bacterium with …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, on and … The work is supported by NIH Common Fund grant 1U01DE034196-01. The JGI team, including Kyrpides, Camargo, and … metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for identifying mobile genetic …
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Better Genome Editing for Bioenergy
… is a powerful, high-throughput gene-editing tool that can help scientists engineer organisms for bioenergy … sgRNA sequences were reliable. In an elegant, quantitative screen, the team designed a pool of sgRNA sequences: six for … was supported by DOE Joint Genome Institute grant  CSP-503076 (IW, HA, and MB) and NSF  1706545 (IW). HA and JW were …
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Crysten Blaby-Haas
Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular Materials Initiative, a … Niyogi KK, Schmutz J, Theg SM, Blaby-Haas CE, Merchant SS. (2021) Widespread polycistronic gene expression in green … umbilicalis (Bangiophyceae, Rhodophyta). PNAS  17: 201703088. Blaby-Haas CE, Padilla-Benavides T, Stübe R, Argüello …
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Introducing New Members of the JGI User Executive Committee
… members to the JGI User Executive Committee (UEC) : Roland Hatzenpichler of Montana State University, Teresa Pawlowska … scientific research.” In particular, she added, “I am interested in interacting with the user community and … and can serve no more than two consecutive terms. In late 2021, the JGI launched a solicitation for nominations for …
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