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Microbiome Data Science Team
… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … advances in management, processing and visualization of “big data,” and artificial Intelligent/machine learning … breakthrough discoveries and catalyzing a major transition of biology into data science.  Research in the Kyrpides …
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Cultivating Symbiotic Antarctic Microbes
… interactions. Using metagenomes recovered directly from environmental samples and cultivated microbes, … factors controlling microbial symbiotic relationships. Summary Symbiotic relationships are long-term biological … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, experimentally demonstrated that …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… tools and techniques applied to samples collected from acidic iron-oxide microbial mats in Yellowstone … a particular DNA sequence from just a few pieces of DNA. Summary The extreme environments found in Yellowstone National … (gene expression), and direct microscopy. Through the JGI’s Community Science Program , the team used metagenome …
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Genome-centric view of carbon processing in thawing permafrost
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Towards a balanced view of the bacterial tree of life
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Integrating Experimentation with Data
… The JGI and EMSL are U.S. Department of Energy (DOE) Office of Science national scientific user facilities dedicated to advancing research in bioenergy … and environmental science. They provide the scientific community access to cutting-edge capabilities for … Click to view a downloadable copy of the sponsor prospectus …
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2024 Progress Report
… home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the … Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic capabilities, … complex biological and environmental systems. We optimize our service to the community through responsibly managing …
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How to Target a Microbial Needle within a Community Haystack
… the genetic make-up of specific uncultivated microbes from complex environmental samples. The Science A team led … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … DNA could be sequenced. Their protocol,  detailed in the journal  Microbiome , combines multiple techniques and was …
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JGI Advisory Committee
… external advisory body, the JAC includes representatives from all specialized JGI advisory and executive committees, such as the User Executive Committee, the DNA Synthesis Science User Advisory Committee, the Fungal and Algal Program User …
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Four principles to establish a universal virus taxonomy
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A view of the pan‐genome of domesticated Cowpea (Vigna unguiculata [L.] Walp.)
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Gene Expression: From On-Off Switch to Dial
… systems, expanding the technologies available for other JGI users outside the realm of bioenergy optimization. Summary Life is all about balance. This study,  recently … area in the DNA, to determine which targets might benefit from an intermediate level of expression. Similar to the …
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