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JGI Accepts 17 Proposals for Community Science Program
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … State University and colleagues are interested in the microbial communities that live on Alaska’s glacially … evolved from a white paper approved through JGI’s CSP New Investigator call to a full-scale submission. She aims …
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Genome-Resolved Meta-Omics Ties Microbial Dynamics to Process Performance in Biotechnology for Thiocyanate Degradation
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Axel Visel
… and implementation of strategic initiatives at the JGI. Dr. Visel received his Ph.D. in 2004 from the Max … for elucidating the gene regulatory landscape of vertebrate genomes, which led to the discovery of thousands of genetic … American Heart Association, Medical Research Council (UK),  Nature, Cell , Nature Genetics , Nature Methods ,  Genome …
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JGI Earth Month: Wetlands Work in #TenHundredWords
DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that … Tringe , JGI’s User Programs deputy and head of the Microbial Systems group through the  DOE Office of Science … Student Research (SCGSR) program . Her research project, “Microbial Community Structure and Methane Production in …
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DOE JGI Metagenome Workflow
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Len Pennacchio
… the Department of Genetics at Stanford University where he uncovered the genetic cause of a rare form of human epilepsy … … The Deputy of Genomic Technologies serves as the JGI’s primary point of contact for all High-Throughput Data … Deputy include interacting with users seeking to exploit new genomic technologies and providing a vision for future …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
In honor of the JGI's 25th anniversary in 2022, we have revisited a number … crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a close relative and model … switchgrass has become an important species whose complex genomes are helping breeders understand how they can boost …
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An Integrated Dataset to Understand Ecosystem Interaction
… the dynamic relationship between poplar trees and their microbial partners. The Science To help better understand … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic …
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Metabolomics
Metabolomics strengthens -omics technologies at the JGI by identifying the actual molecules present in an … light on nutrient cycling, and leads to the discovery of new molecules and pathways. The JGI Metabolomics Platform delivers rich metabolite profiles …
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Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection
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Picking Up Threads of Cotton Genomics
… darwinii are the others. All of these cotton lineages have genomes approximately 2.3 billion bases or Gigabases (Gb) in … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … for Biotechnology. “The goal has been for all this new cotton work, and even the original cotton project was to …
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Jeremy Schmutz
… eukaryotic organisms from simple yeasts to large vertebrate genomes.  For the past 13 years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community … complex polyploid genome architecture of sugarcane. Nature 628, 804–810. Sreedasyam, A., Plott, C., MdS Hossain, …
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