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Covariation of hot spring geochemistry with microbial genomic diversity, function, and evolution
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Comparative Genomics Using the Integrated Microbial Genomes and Microbiomes (IMG/M) System: A Deinococcus Use Case
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Making a Lichen Together
… could help inform efforts at bioengineering symbiotic microbial consortia for bioenergy crops. And because lichens … in the lichen lifestyle. The team’s results appear in  BMC Genomics . To explore the genomes, Armaleo and colleagues … by the National Science Foundation under Grant No. 1011101 to E.S. and J.M.L. … Fungus Genome on MycoCosm data …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… their expertise in developing and managing public viral genomics resources such as analytical tools and data … in developing and maintaining the JGI’s  Integrated Microbial Genomics and Microbiomes (IMG/M) system. The … CheckV , which assesses the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… analyses? A:  For the JGI  New Investigator and  Functional Genomics proposal calls, projects can request up to 50 polar … Q:  Any advice on normalizing metabolomic data from a whole microbial community, without having cell counts or … see this  Metabolomics Data Analysis – Tips from Users page.  Q:  Is the metabolic study able to build a profile …
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David Goodstein
… group also develops and maintains the Phytozome Plant Genomics web portal. … BS in Physics, New York University, … genomes.  eLife 11, e78526. Li et al., 2021.  Plant Pan-Genomics Comes of Age . Annual Review of Plant Biology 72, … 2012. Phytozome: a comparative platform for green plant genomics.      Nucleic Acids Research 40, D1178. …
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The Expanding Universe of Methane Metabolisms in Archaea
Metagenome-assembled archaeal genomes provide new insights … issue of Nature Microbiology , they mined the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained … in April, which immediately precedes the JGI’s 14th Annual Genomics of Energy & Environment Meeting. Registration for …
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A One-Stop Shop for Analyzing Algal Genomes
… sequence and understand. A team of researchers led by Algal Genomics Program lead Igor Grigoriev and data scientist Alan … tools created by JGI researchers, including the Integrated Microbial Genomes and Microbiomes (IMG/M) system for microbial and metagenome datasets, MycoCosm for comparative analysis of …
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DOE JGI Interns Share Their Summer Experiences
This summer, the DOE JGI hosted 10 interns who came from a wide range of backgrounds. Many … second year of the DOE JGI/University of California, Merced Genomics Distinguished Graduate Internship Program, Susannah …
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Degradation Reduces Microbial Richness and Alters Microbial Functions in an Australian Peatland
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The microbial ecology of permafrost
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Microbial Diversity for Biotechnology
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