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Comparative proteomic profiles of the marine cyanobacterium Trichodesmium erythraeum IMS101 under different nitrogen regimes
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Genome Sequence of Polycyclovorans algicola Strain TG408, an Obligate Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at UC … acids (aa) in size, half that of previously known class 2 CRISPR enzymes that are typically 950—1400 aa. They were … by searching for Cas12d homologs across IMG/M’s assembled metagenomic data. It turned out that some of these were …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… of this is based on a really great paper that came out in 2020 where this is all explained in detail, so if you’d like … the fungal farms from other fungus that want to take advantage of that resource. So in those type of situations, what … and so on. So I have the feeling that we are just at the stage in which synthetic biology could be making secondary …
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Georg Rath
… leading the Systems Infrastructure Team at the JGI since 2020. Before joining the JGI, he has been working on the …
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DNA Synthesis Program
… has been a pioneering effort in functional genomics since 2012, with a focus on addressing critical energy and … genome portals, we study lignocellulose decomposition, CO2 fixation, redox reactions, and plant metabolite … The IMG/M system serves as a community resource for comparative …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… these gaps of knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on Actinobacteria … the JGI has pioneered, including single-cell genomics and metagenomics. The GEBA initiative has also utilized a very … on the JGI’s Integrated Microbial Genomes & Microbiomes ( IMG/M ) portal. As part of a comparative analysis, 824 new …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… Back in 2011, JGI-supported researchers published a paper in the journal Science . It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The data from that study is now used …
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JGI Announces 2023 Community Science Program Awardees
… to the proposers of the 19 proposals selected for the 2023 Community Science Program call of the U.S. Department of … on our website. The approved proposals start October 1, 2022. See the full list of awardees below: …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close …
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Marine Microbe Contains Multitudes
… with different lifestyles. The Science The bacterium SAR324 is unusually cosmopolitan. In the ocean’s North Pacific … community genomes and expressed gene transcripts (metagenomes, metatranscriptomes), as well as the genomes of … on the JGI Integrated Microbial Genomes & Microbiomes (IMG/M) system . By analyzing the metagenomes, …
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