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Tracing the Evolution of Shiitake Mushrooms
… from around the world. By complete sequencing of 24 new mushroom genomes, and assembling genomes from 60 … Additionally, these fungi play a role in the global  carbon cycle . As decayers, Lentinula fungi access carbon …
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JGI Advisory Committees Code of Conduct
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Pinning Down a Piece of Photosynthesis
… have new insights into how these ocean photosynthesizers cycle carbon in changing conditions. The products of … a similar region —  a domain of unknown function, DUF2470. In the world of proteins, a domain of unknown function …
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Tracking the Origins of Methane-Producing Microbes
Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane … production. They are thought to use billions of tons of the carbon dioxide trapped in biomass each year to do so. As … to have a substantial influence on the global carbon cycle. All methanogenic archaea use one of three pathways …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… symbiotic interactions are difficult to study in the lab. Metagenomics provides new views of these relationships.  … crust, there is a vast ecosystem connected to the global carbon cycle. Archaea are key players in this deep biosphere. They …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… microorganisms therefore play a critical role in the global carbon cycle, and are of significant interest for their potential … to  Euryarchaeota .  Finding Methane-Making Microbes with Metagenomics  By leveraging metagenomics to sample the …
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Boosting Small Molecule Production in Super “Soup”
CRISPR-Cas9 that enhanced their ability to redirect the carbon in the cells toward particular pathways. In this … than were noted inside the cell. “One of the huge advantages of the cell-free system is that the cells are no … longer growing,” Rasor said. “So they can push more of the carbon that we feed into a product molecule and so we’re …
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Triggering Morel Fruiting
… revealed a striking capability of morel mycelium to acquire carbon from lignocellulosic-abundant matters such as plant litter and to incorporate the assimilated carbon into the soil, reducing the amount of CO2 emissions … system which allows the black morel to complete its lifecycle in an artificial environment. It is particularly …
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An Integrated Dataset to Understand Ecosystem Interaction
… economic value as both biofuel feedstock and their role in carbon sequestration. Poplar trees grow quickly in a variety … soil chemistry offers insights into how these ecosystems cycle nutrients like nitrogen and carbon, as well as … managed through human intervention. By leveraging metagenomics, scientists were able to analyze the DNA of …
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Fishing for Novel Cellulose Degraders
… known to be key contributors to the planet’s biogeochemical cycles, but the vast majority remains uncultivated and … and Environmental Research under contract DE-FC02-07ER64494. EG is supported by the NIGMS Biotechnology Training … program (LDRD) entitled ‘Tackling microbial-mediated plant carbon decomposition using “function-driven” genomics’. …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… and Gene Integration . ACS Chem Biol. 2019 Apr 19;14(4):704-714. doi: 10.1021/acschembio.8b01107. Epub 2019 Apr … typically use a measure of biomass, e.g. wet weight, total carbon analysis of the biomass, etc. Q:  If we have only the … see this  Metabolomics Data Analysis – Tips from Users page.  Q:  Is the metabolic study able to build a profile …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
… like viruses spread their DNA, they can affect how microbes cycle nutrients and adapt to climate change. …
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