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DAP-seq Drives Robust Mapping of Gene Regulation
… worked with 10 species ranging from grasses to broccoli and trees like poplar, spanning about 150 million years of … identical binding sites for proteins from grasses and trees that diverged 150 million years ago, highlighting the …
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Natural Prodcast Episode 11: Marnix Medema
… part of the main codebase, so that if we get updates, then their features would go along. So he actually contributed … the pandemic, everybody was looking for something to do on their computer, so I got so many submissions. We got so many … organisms, for example, are likely for which organisms, their genomes contain the same biosynthetic gene clusters or …
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Axel Visel
… Click to learn more about our seven science program — their areas of focus, major initiatives and more.  … Visel A (2013). De novo transcriptome assembly of drought tolerant CAM plants, Agave deserti and Agave tequilana. BMC …
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Igor Grigoriev
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is published in a … contains over one million different species and evidence of their ancestors can be found in fossil records dating over a … all interns to build presentations that help to explain their work and its impacts at Berkeley Lab and beyond. Last …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… — specifically, from the methane-making microbes within their rumen. There is another climate-minded reason for studying rumen: Livestock live off plant matter, and their rumen are highly capable of breaking down potential …
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Natural Prodcast Episode 14: Nigel Mouncey
… of anything that’s relevant to the Department of Energy and their mission. And for a long time, I think, we’ve just been … expanding the diversity of known secondary metabolites and their biosynthetic clusters. How can we basically express …
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The Expanding Universe of Methane Metabolisms in Archaea
… is published in the same issue of Nature Microbiology . Their study focuses on the discovery of new populations … two metabolic pathways “Up to this point, most phylogenomic trees have relied on only one korarchaeotal representative,” …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… central energy-producing process in complex cells. Despite their biological importance, these genomes have resisted … before this study. A statistical comparison of evolutionary trees built from mitochondrial and nuclear genomes showed … ongoing evolutionary processes. The team then extended their analysis beyond the reference set, using two …
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Open Frameworks Training the Next Generation of Scientists
… educators are partnering with the JGI and KBase to tap into their existing infrastructures and technologies, enabling … to the global research community.  KBase has developed their own educational program in parallel to Myco-Ed: …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… set up a broad experiment to compare results between labs. Their labs, as well as Pett-Ridge’s group, will assemble …
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Defining a Pan-Genome for Antarctic Archaea
… extreme temperature and salinity conditions, understanding their adaptations offers insights into microbial evolution, … have been studying the haloarchaea that thrive in the very salty waters of Deep Lake to better understand how they’ve …
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