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Taking Stock of the Known and Unknown Microbial Space
… the microbial diversity we know about, and proposes a path forward to curate and cultivate what is still unknown.  “We … however, the team added that this information is still computationally derived. Experimental studies on cultivated … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… how these hosts and hitchhikers coexist is key for understanding their impact on wider ecosystems, but … interactions are difficult to study in the lab. Metagenomics provides new views of these relationships.  … Archaea, bacteria, and viruses all operate in concert to form the foundation of this deep Earth ecosystem. For …
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Ian Blaby
Since 2019 Dr. Blaby heads the DNA synthesis platform at the Joint Genome Institute, where he leads three … analysis for synthetic biology and functional genomics. Prior to joining the JGI, he was a group lead at … Award for Research Excellence … Education … Selected Publications … Awards and Honors …
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Scaling Up Existing Skill Sets
… paired six UC Merced students with seven JGI researchers for bioinformatics internship opportunities in fields … the door for me in the sense that I learned many different tools in bioinformatics research. Also, it consolidated my … my JGI internship was the learning experience I got in computational research. Overcoming a huge learning curve to …
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Cataloging the Microbes that Manage the Health of River Systems
States. They also provided multiple access points to the information. The team harnessed a community-science program to … immediately explore and reuse the data from the GROWdb for comparative analyses with their own data on the KBase … Science Program and the University of Colorado Anschutz’s Genomics Shared Resource. The work (proposal …
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I-Min (Amy) Chen
… of the Object-Protocol Model (OPM) data management tools for scientific applications developed at Berkeley Lab. Dr. Chen is currently the Microbiome Computational Resource Lead at the JGI, responsible for the … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …
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MicrobesOnline: an integrated portal for comparative and functional genomics
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Phytozome: a comparative platform for green plant genomics
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Comparative genomics of clinical and environmental Vibrio mimicus
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Comparative Genomics Analysis of Trichoderma reesei Strains
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Comparative genomics of Aspergillus nidulans and section Nidulantes
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Microbial Genomics & Metagenomics (MGM) Workshop
… (JGI) is offering a five-day workshop on Microbial Genomics and Metagenomics. Details: mgm.jgi.doe.gov   This … Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational analysis and interpretation of sequence data. …
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