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MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm
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Computational protein design enables a novel one-carbon assimilation pathway
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A survey of computational approaches for characterizing microbial interactions in microbial mats
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Help from Citrus’ Bitter, Hardier Cousin
… The chromosome-scale genome sequence of trifoliate orange yields clues to disease-resistance that could prove fruitful for saving Citrus from greening disease. You’ve probably … The U.S. Department of Energy Joint Genome Institute, a DOE Office of … The JGI provides integrated high-throughput sequencing and computational analysis that enable systems-based scientific …
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Enabling pan-repository reanalysis for big data science of public metabolomics data
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DRAM for distilling microbial metabolism to automate the curation of microbiome function
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Automated annotation of scientific texts for ML-based keyphrase extraction and validation
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EcoBOT: an AI/ML enabled automated phenotyping capability for model plants
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US … States. They also provided multiple access points to the information. The team harnessed a community-science program to … 1,000 metagenomes and established standardized sequencing protocols so that researchers could compare results across …
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Community Science Program
… The Community Science Program (CSP) provides the scientific community at large with … sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . … more customized analysis, the JGI also participates in publication of results. See more details on our Review …
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JGI on the 2020 Highly Cited Researchers List
… Congratulations to the 2020 Highly Cited Researchers at the JGI! … highly-cited papers that rank in the top 1% by citations for field and year in the Web of Science.” Less than 6,200 … Simon Roux are part of a team that  developed CheckV , an automated tool to help researchers assess and improve the …
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the Stanford Human Genome Center, now the HudsonAlpha … he manages the de novo plant assembly and the post-genome computational analysis at HudsonAlpha. … Jeremy Schmutz is the Plant Science Program Head at the JGI. Click to learn more …
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