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JGI@25: From Life at the Extremes to Editing Genomes
… The collaboration has resulted in several papers, including one in 2018 on the discovery of miniature CRISPR-associated … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V CRISPR-Cas Systems Mol Cell. 2020 Aug 6;79(3):416-424.e5. doi: …
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A Sorghum Pangenome Opens More Doors to Discovery
… decades of technological development, dozens of reference genomes and thousands of resequenced sorghum varieties, a … and more — however, a single reference genome shows only one slice of the adaptation possible for this plant. In … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et …
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JGI@25: Using Team Science to Build Communities Around Data
… (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … with at least two genomes, and another 190 families with one. There are another 100 genomes in progress and 200 that … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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Refining the Process of Identifying Algae Biotechnology Candidates
… multiple institutions have sequenced and analyzed the genome of an alga that thrives in saltwater (halotolerant) … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … at the JGI led the multi-omics analysis effort for a more complete picture. The team annotated the algal genome and …
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Journal publication caps JGI pilot project with fledgling Florida … . “Before JGI was involved, I was not sure we could even complete a full project. Every other group I contacted was … his high school juniors a research project experience and one of his email inquiries, sent through JGI’s  Integrated …
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Raman-based sorting of microbial cells to link functions to their genes
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High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types
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A Collaboration to Improve Plant Genome Annotations Across Species
… The team set out to characterize the transcriptome – the complete set of RNA molecules transcribed from all the genes within a cell or tissue at a specific time or under specific … included over 2000 RNA Seq libraries. As I previously mentioned, this is an updateable resource. To demonstrate that, …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science … using Panicum hallii (Hall’s panicgrass), by generating two complete genomes from varieties that diverged over a million … Science Program , JGI sequenced and assembled near-complete genomes of P. hallii var. hallii (99.2% complete) …
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A roadmap for equitable reuse of public microbiome data
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