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RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … protocol for injecting a solution that bolsters the immune system of oaks and enables them to fend off the effects of …
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Silver age of GOLD introduces new features
… data are accessible on JGI data portals including the Integrated Microbial Genomes & Microbiomes (IMG/M) system, enhancing … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked … U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, and incredibly complex — making it difficult to grasp a deeper … paving the way for C-fern to expand its role as a key plant system for teaching next-generation plant biology. …
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The More the Merrier: Making the Case for Plant Pan-genomes
… Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational …
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Integrating Microbial Community Data Into an Ecosystem‐Scale Model to Predict Litter Decomposition in the Face of Climate Change
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NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks
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Ian Blaby
… Since 2019 Dr. Blaby heads the Biodesign Platform at the … strain engineering and bioinformatic tool development/data analysis for synthetic biology and functional genomics. … Wales, Cardiff, Genetics Ph.D. – University of Cambridge., Microbial molecular biology Post-doctoral positions  – …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data … website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  … building high performance user interfaces and backend data systems. Trying to maintain v12’s codebase and legacy data …
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A Sorghum Pangenome Opens More Doors to Discovery
… decades of technological development, dozens of reference genomes and thousands of resequenced sorghum varieties, a … and Environmental Research (BER) program to apply systems biology approaches to plants relevant to national … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et …
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A data analysis and coordination center for the human microbiome project
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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) data suite—which … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational …
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